Alia Alia
Universitair docent
- Naam
- Dr. A. Alia
- Telefoon
- +31 71 527 4623
- a.alia@chem.leidenuniv.nl
- ORCID iD
- 0000-0002-4900-9749
Meer informatie is beschikbaar op de Engelse profielpagina.
Promovendi
Universitair docent
- Wiskunde en Natuurwetenschappen
- Leiden Institute of Chemistry
- LIC/Energy & Sustainability
- Annunziato M., Bashirova N., Eeza M.N.H., Lawson A., Fernandez‐Lima F., Tose L.V., Matysik J., Alia A. & Berry J.P. (2024), An integrated metabolomics-based model, and identification of potential biomarkers, of perfluorooctane sulfonic acid toxicity in zebrafish embryos, Environmental Toxicology and Chemistry 43(4): 896-914.
- Kim Y., Alia A., Kurle-Tucholski P., Wiebeler C. & Matysik J. (2024), Electronic structures of radical-pair-forming cofactors in a heliobacterial reaction center, Molecules 29(5): 1021.
- Annunziato M., Bashirova N., Eeza M.N.H., Lawson A., Benetti D., Stieglitz J.D., Matysik J., Alia. A. & Berry J.P. (2023), High-resolution magic angle spinning (HRMAS) NMR identifies oxidative stress and impairment of energy metabolism by zearalenone in embryonic stages of zebrafish (Danio rerio), olive flounder (Paralichthys olivaceus) and yellowtail snapper (Ocyurus chrysurus), Toxins 15(6): 397.
- Eeza M.N.H., Singer R., Ding Y., He J., Zuberi Z., Baelde H.J., Groot H.J.M. de, Matysik J., Spaink H.P. & Alia A. (2023), Probing microstructural changes in muscles of leptin-deficient zebrafish by non-invasive ex-vivo magnetic resonance microimaging, PLoS ONE 18(4): e0284215.
- Hu W., Liu L., Forn-Cuní G., Ding Y., Alia A. & Spaink H.P. (2023), Transcriptomic and metabolomic studies reveal that toll-like receptor 2 has a role in glucose-related metabolism in unchallenged zebrafish larvae (Danio rerio), Biology 12(2): 323.
- Bashirova N., Poppitz D., Klüver N., Scholz S., Matysik J. & Alia A. (2023), A mechanistic understanding of the effects of polyethylene terephthalate nanoplastics in the zebrafish (Danio rerio) embryo, Scientific Reports 13(1): 1891.
- Ding Y., Haks M.C., Eeden S.J.F. van den, Ottehoff T.H.M., Harms A.C., Hankemeier T., Eeza M.N.H., Matysik J., Alia A. & Spaink H.P. (2022), Leptin mutation and mycobacterial infection lead non-synergistically to a similar metabolic syndrome, Metabolomics 18(8): 67.
- Alia A. & Singer R. (2022), Evaluation of suprachiasmatic nucleus in Alzheimer’s disease with non-invasive magnetic resonance methods, Neural Regeneration Research 17(8): 1753-1754.
- Eeza M.N.H., Bashirova N., Zuberi Z., Matysik J., Berry J.P. & Alia A. (2022), An integrated systems-level model of ochratoxin A toxicity in the zebrafish (Danio rerio) embryo based on NMR metabolic profiling, Scientific Reports 12: 6341.
- Annunziato M., Eeza M.N.H., Bashirova N., Lawson A., Matysik J., Benetti D., Grosell M., Stieglitz J.D., Alia A. & Berry J.P. (2022), An integrated systems-level model of the toxicity of brevetoxin based on high-resolution magic-angle spinning nuclear magnetic resonance (HRMAS NMR) metabolic profiling of zebrafish embryos, Science of the Total Environment 803: 149858.
- Matysik J., Ding Y.H., Kim Y., Kurle P., Yurkovskaya A., Ivanov K. & Alia A. (2022), Photo-CIDNP in solid state, Applied Magnetic Resonance 53: 521-537.
- Ding Y., Haks M.C., Forn Cuní G., He J., Nowik N., Harms A.C., Hankemeier T., Eeza M.N.H., Matysik J., Alia A. & Spaink H.P. (2021), Metabolomic and transcriptomic profiling of adult mice and larval zebrafish leptin mutants reveal a common pattern of changes in metabolites and signaling pathways, Cell & Bioscience 11(1): 126.
- Schadewijk R. van, Krug J.R., Webb A., As H. van, Velders A.H., Groot H.J.M. de & Alia A. (2021), MRM microcoil performance calibration and usage demonstrated on Medicago truncatula roots at 22 T, Journal of visualized experiments 167: e61266.
- Augustijn D., Groot H.J.M. de & Alia A. (2021), HR-MAS NMR applications in plant metabolomics, Molecules 26(4): 931.
- He J., Ding Y., Nowik N., Jager C., Eeza M.N.H., Alia A., Baelde H.J. & Spaink H.P. (2021), Leptin deficiency affects glucose homeostasis and results in adiposity in zebrafish, Journal of Endocrinology 249(2): 125-134.
- Eezaa M.N.H., Singer R., Höfling C., Matysik J., Groot H.J.M. de, Roβner S. & Alia A. (2021), Metabolic profiling of suprachiasmatic nucleus reveals multifaceted effects in an Alzheimer's disease mouse model, Journal of Alzheimer's Disease 81(2): 797-808.
- Kettwig M., Ternka K., Wendland K., Krüger D.M., Zampar S., Schob C., Franz J., Aich A., Winkler A., Sakib M.S., Kaurani L., Epple R., Werner H.B., Hakroush S., Kitz J., Prinz M., Bartok E., Hartmann G., Schröder S., Rehling P., Henneke M., Boretius S., Alia A., Wirths O., Fischer A., Stadelmann C., Nessler S. & Gärtner J. (2021), Interferon-driven brain phenotype in a mouse model of RNaseT2 deficient leukoencephalopathy, Nature Communications 12: 6530.
- Ding Y. Raterink R. Marín‑Juez R. Veneman W.J. Egbers K. Eeden S. van den Haks M.C. Joosten S.A. Ottenhof T.H.M. Harms A.C. Alia A. Hankemeier T. Spaink H.P. (2020), Tuberculosis causes highly conserved metabolic changes in human patients, mycobacteria‑infected mice and zebrafish larvae, Scientific Reports 10: 11635.
- Krug J.R. Schadewijk R. van Vergeldt F.J. Webb A.G. Groot H.J.M. de Alia A. As H. van Velders A.H. (2020), Assessing spatial resolution, acquisition time and signal-to-noise ratio for commercial microimaging systems at 14.1, 17.6 and 22.3 T, Journal of Magnetic Resonance 316: 106770.
- Schadewijk R. van, Krug J.R., Shen D., Sai Sankar Gupta K.B., Vergeldt F.J., Bisseling T., Webb A., As H. van, Velders A.H., Groot H.J.M. de & Alia A. (2020), Magnetic Resonance Microscopy at Cellular Resolution and Localised Spectroscopy of Medicago truncatula at 22.3 Tesla, Scientific Reports 10: 971.
- Gebreab K.Y., Eeza M.N.H., Bai T., Zuberi Z., Matysik J., O'Shea K.E., Alia A. & Berry J.P. (2020), Comparative toxicometabolomics of perfluorooctanoic acid (PFOA) and next-generation perfluoroalkyl substances, Environmental Pollution 265(Part A): 114928.
- Janssen G.J., Eschenbach P., Kurle P., Bode B.E., Neugebauer J., Groot H.J.M. de, Matysik J. & Alia A. (2020), Analysis of the electronic structure of the primary electron donor of photosystem I of Spirodela oligorrhiza by photo-CIDNP solid-state NMR, Magnetic Resonance 1(2): 261–274.
- Paul S., Roy U., Böckers M., Neugebauer J., Alia A. & Matysik J. (2019), 15N photo-CIDNP MAS NMR analysis of a bacterial photosynthetic reaction center of rhodobacter sphaeroides wildtype, The Journal of Chemical Physics 151: 195101.
- Pérez-Rius C., Folgueira M., Elorza-Vidal X., Alia A., Hoegg-Beiler M.B., Eeza M.H.B., Luz Díaz M., Nunes V., Barrallo-Gimeno A. & Estévez R. (2019), Comparison of zebrafish and mice knockouts for megalencephalic leukoencephalopathy proteins indicates that GlialCAM/MLC1 forms a functional unit, Orphanet Journal of Rare Diseases 14: 268.
- Bielytskyi P., Gräsing D., Zahn S., Alia A. & Matysik J. (2019), 15N–1H Transfer of Light-Induced Nuclear Hyperpolarization in Frozen Photosynthetic Reaction Centers, Applied Magnetic Resonance 50(5): 695–708.
- Zill J.C., Kansy M., Goss R., Alia A., Wilhelm C. & Matysik J. (2019), 15N photo-CIDNP MAS NMR on both photosystems and magnetic fielddependent 13C photo-CIDNP MAS NMR in photosystem II of the diatom Phaeodactylum tricornutum, Photosynthesis Research 140(2): 151-171.
- Bielytskyi P., Gräsing D., Zahn S., Mote K.R., Alia A., Madhu P.K. & Matysik J. (2019), Assignment of NMR resonances of protons covalently bound to photochemically active cofactors in photosynthetic reaction centers by 13C–1H photo-CIDNP MAS-J-HMQC experiment, Journal of Magnetic Resonance 298: 64-76.
- Roy U., Heredia-Munoz M.T., Stutea L., Hofling C., Matysik J., Meijer J.H., Rossner S. & Alia A. (2019), Degeneration of the suprachiasmatic nucleus in an Alzheimer's disease mouse model monitored by in vivo magnetic resonance relaxation measurements and immunohistochemistry, Journal of Alzheimer's Disease 69(2): 363-375.
- Zuberi Z., Eeza M.N.H., Matysik J., Berry J.P. & Alia A. (2019), NMR-Based Metabolic Profiles of Intact Zebrafish Embryos Exposed to Aflatoxin B1 Recapitulates Hepatotoxicity and Supports Possible Neurotoxicity, Toxins 11(5): 258.
- Augustijn D., Groot H.J.M. de & Alia A. (2019), A robust circadian rhythm of metabolites in Arabidopsis thaliana mutants with enhanced growth characteristics, PLoS ONE 14(6): e0218219.
- Gräsing D., Dziubińska-Kühn K.M., Zahn S., Alia A. & Matysik J. (2019), Studying hydrogen bonding and dynamics of the acetylate groups of the Special Pair of Rhodobacter sphaeroides WT, Scientific Reports 9(1): 10528.
- Zill J.C., Kansy M., Goss R., Alia A., Wilhelm C. & Matysik J. (2019), N-15 photo-CIDNP MAS NMR on both photosystems and magnetic field-dependent C-13 photo-CIDNP MAS NMR in photosystem II of the diatom Phaeodactylum tricornutum, Photosynthesis Research 140(2): 151-171.
- Janssen G.J., Bielytskyi P., Artiukhin D.G., Neugebauer J., Groot H.J.M. de, Matysik J. & Alia A. (2018), Photochemically induced dynamic nuclear polarization NMR on photosystem II: donor cofactor observed in entire plant, Scientific Reports 8: 17853.
- Flemmig J., Zamocky M. & Alia A. (2018), Amyloid beta and free heme: bloody new insights into the pathogenesis of Alzheimer's disease, Neural Regeneration Research 13(7): 1170-1174.
- Bielytskyi P., Gräsing D., Mote K.R., Sai Sankar Gupta K.B., Vega S., Madhu P.K., Alia A. & Matysik J. (2018), 3C → 1H transfer of light-induced hyperpolarization allows for selective detection of protons in frozen photosynthetic reaction center, Journal of Magnetic Resonance 293: 82-91.
- Alia A. & Roßner S. (2018), Gender, GABAergic dysfunction and AD, Aging 10(12): 3636-3637.
- Zill J.C., He Z., Tank M., Ferlez B.H., Canniffe D.P., Lahav Y., Bellstedt P., Alia A., Schapiro I., Golbeck J.H., Bryant D.A. & Matysik J. (2018), 15N photo-CIDNP MAS NMR analysis of reaction centers of Chloracidobacterium thermophilum, Photosynthesis Research 137(2): 295-305.
- Chiziane E., Telemann H., Krueger M., Adler J., Arnhold J., Alia A. & Flemmig J. (2018), Free heme and amyloid-β: a fatal liaison in Alzheimer's disease, Journal of Alzheimer's Disease 61(3): 963-984.
- Roy U., Stute L., Höfling C., Hartlage-Rübsamen M., Matysik J., Roβner S. & Alia A. (2018), Sex- and age-specific modulation of brain GABA levels in a mouse model of Alzheimer's disease, Neurobiology of Aging 62: 168-179.
- Najdanova M., Grasing D., Alia A. & Matysik J. (2018), Analysis of the electronic structure of the special pair of a bacterial photosynthetic reaction center by (13) C photochemically induced dynamic nuclear polarization magic-angle spinning NMR using a double-quantum axis, Photochemistry and Photobiology 94(1): 69-80.
- Schadewijk R. van, Berg T.E. van den, Sai Sankar Gupta K.B., Ronen I., Groot H.J.M. de & Alia A. (2018), Non-invasive magnetic resonance imaging of oils in Botryococcus braunii green algae: Chemical shift selective and diffusion-weighted imaging, PLOS ONE 13(8): e0203217.
- Augustijn D., Tol N.V. van, Zaal E.J. van der, Groot H.J.M. de & Alia A. (2018), High-resolution magic angle spinning NMR studies for metabolic characterization of Arabidopsis thaliana mutants with enhanced growth characteristics, PLoS ONE 13(12): e0209695.
- Roy U., Conklin L., Schiller J., Matysik J., Berry J.P. & Alia A. (2017), Metabolic profiling of zebrafish (Danio rerio) embryos by NMR spectroscopy reveals multifaceted neurotoxicity of beta-methylamino-L-alanine (BMAA), Scientific Reports 7: 17305.
- Tol N. van, Rolloos A.M., Augustijn D., Alia A., Groot H.J.M. de, Hooykaas P.J.J. & Zaal E.J. van der (2017), An Arabidopsis mutant with high operating efficiency of Photosystem II and low chlorophyll fluorescence, Scientific Reports 7: 3314.
- Zill J.C., Kansy M., Goss R., Köhler L., Alia A., Wilhelm C. & Matysik J. (2017), Photo-CIDNP in the reaction center of the diatom Cyclotella meneghiniana observed by 13C MAS NMR, Zeitschrift für Physikalische Chemie 231(2): 347-367.
- Gräsing D., Bielytskyi P., Cépedes-Camacho I.F., Alia A., Marquardsen T., Engelke F. & Matysik J. (2017), Field-cycling NMR with high-resolution detection under magic-angle spinning: determination of field-window for nuclear hyperpolarization in a photosynthetic reaction center, Scientific Reports 7(1): 12111.
- Berry J.P., Roy U., Jaja-Chimedza A., Sanchez K., Matysik J. & Alia A. (2016), High-resolution magic angle spinning nuclear magnetic resonance of intact zebrafish embryos detects metabolic changes following exposure to teratogenic polymethoxyalkenes from algae, Zebrafish 13(5): 456-465.
- Thamarath Surendran S., Alia A., Bode B.E. & Matysik J. (2016), The solid-state photo-CIDNP effect, Acta Physico - Chimica Sinica 32(2): 399-404.
- Augustijn D., Roy U., Schadewijk R. van, Groot H.J.M. de & Alia A. (2016), Metabolic Profiling of Intact Arabidopsis thaliana Leaves during Circadian Cycle Using 1H High Resolution Magic Angle Spinning NMR, PLoS ONE 11(9): e0163258.
- Kara F., Höfling C., Roßner S., Schliebs R., Linden A. van der, Groot H.J.M. de & Alia A. (2015), In vivo longitudinal monitoring of changes in the corpus callosum integrity during disease progression in a mouse model of Alzheimer’s disease, Current Alzheimer Research 12(10): 941-950.
- Chatzopoulou Chatzi A., Upasana R., Meijer A.H., Alia A., Spaink H.P. & Schaaf M.J.M. (2015), Transcriptional and metabolic effects of glucocorticoid receptor alpha and beta signaling in zebrafish, Endocrinology 156(5): 1757-1769.
- Paul S., Bode B.E., Matysik J. & Alia A. (2015), Photochemically Induced Dynamic Nuclear Polarization Observed by Solid-State NMR in a Uniformly C-13-Isotope-Labeled Photosynthetic Reaction Center, Journal of Physical Chemistry B 119(43): 13897-13903.
- Najdanova M., Janssen G.J., Groot H.J.M. de, Matysik J. & Alia A. (2015), Analysis of electron donors in photosystems in oxygenic photosynthesis by photo-CIDNP MAS NMR, Journal of Photochemistry and Photobiology B: Biology 152(B): 261–271.
- Sai Sankar Gupta K.B., Daviso E., Jeschke G., Alia A., Ernst M. & Matysik J. (2014), Spectral editing through laser-flash excitation in two-dimensional photo-CIDNP MAS NMR experiments, Journal of Magnetic Resonance 246: 9-17.
- Amerongen Y.F van, Roy U., Spaink H.P., Groot H.J.M. de, Huster D., Schiller J. & Alia A. (2014), Zebrafish brain lipid characterization and quantification by 1H nuclear magnetic resonance spectroscopy and MALDI-TOF mass spectrometry, Zebrafish 11(3): 240-247.
- Sirisi S., Folgueira M., López-Hernández T., Minieri L., Pérez-Rius C., Gaitán-Peñas H., Zang J., Martínez A., Capdevila-Nortes X., De La Villa P., Upasana R., Alia A., Neuhauss S., Ferroni S., Nunes V., Estévez R. & Barrallo-Gimeno A. (2014), Megalencephalic leukoencephalopathy with subcortical cysts protein 1 regulates glial surface localization of GLIALCAM from fish to humans, Human Molecular Genetics 23(19): 5069-5086.
- Alia A., Duijn S. van, Kara F. & Buchem M.A. van (2014), Direct in vivo assessment of sex-related metabolic differences in a mouse model of Alzheimer's disease by MRI, Alzheimer's & Dementia 10(4S/22): P826.
- Sai Sankar Gupta K.B., Alia A., Buda F., Groot H.J.M. de & Matysik J. (2013), Bacteriopheophytin a in the active branch of the reaction center of Rhodobacter sphaeroides is not disturbed by the protein matrix as shown by C-13 photo-CIDNP MAS NMR, Journal of Physical Chemistry B 117(12): 3287-3297.
- Alia A., Buda F., Groot H.J.M. de & Matysik J. (2013), Solid-state NMR of nanomachines involved in photosynthetic energy conversion, Annual Review of Biophysics 42: 675-699.
- Duijn S. van, Nabuurs R.J.A., Duinen S.G. van, Natte R., Buchem M.A. van & Alia A. (2013), Longitudinal monitoring of sex-related in vivo metabolic changes in the brain of Alzheimer's disease transgenic mouse using magnetic resonance spectroscopy, Journal of Alzheimer's Disease 34(4): 1051-1059.
- Sai Sankar, Gupta K.B., Alia A., Groot H.J.M. de & Matysik J. (2013), Symmetry break of special pair: photochemically induced dynamic nuclear polarization NMR confirms control by nonaromatic substituents, Journal of the American Chemical Society 135(28): 10382-10387.
- Thamarath S.S., Alia A., Roy E., Sai Sankar Gupta K.B., Golbeck J.H. & Matysik J. (2013), The field-dependence of the solid-state photo-CIDNP effect in two states of heliobacterial reaction centers, Photosynthesis Research 117(1-3): 461-469.
- Kara F., Chen F., Ronen I., Groot H.J.M. de, Matysik J. & Alia A. (2013), In vivo measurement of transverse relaxation time in the mouse brain at 17.6 T, Magnetic Resonance in Medicine 70(4): 985-993.
- Ramirez I.B.R., Pietka G., Jones D.R., Divecha N., Alia A., Baraban S.C., Hurlstone A.F.L. & Lowe M. (2012), Impaired neural development in a zebrafish model for Lowe syndrome, Human Molecular Genetics 21(8): 1744-1759.
- Janssen G.J., Roy E., Matysik J. & Alia A. (2012), 15N Photo-CIDNP MAS NMR To Reveal Functional Heterogeneity in Electron Donor of Different Plant Organisms, Applied Magnetic Resonance 42(1): 57-67.
- Kara F., Dongen E.S. van, Schliebs R., Buchem M.A. van, Groot H.J.M. de & Alia A. (2012), Monitoring blood flow alterations in the Tg2576 mouse model of Alzheimer's disease by in vivo magnetic resonance angiography at 17.6 T, NeuroImage 60(2): 958-966.
- Vermeij W.P., Florea B.I., Isenia S., Alia A., Brouwer J. & Backendorf C.M.P. (2012), Proteomic Identification of in Vivo Interactors Reveals Novel Function of Skin Cornification Proteins, Journal of Proteome Research 11(6): 3068-3076.
- Thamarath S.S., Bode B.E., Prakash S., Sai Sankar Gupta K.B., Alia A., Jeschke G. & Matysik J. (2012), Electron Spin Density Distribution in the Special Pair Triplet of Rhodobacter sphaeroides R26 Revealed by Magnetic Field Dependence of the Solid-State Photo-CIDNP Effect, Journal of the American Chemical Society 134(13): 5921-5930.
- Thamarath Surendran S., Alia A., Daviso E., Mance D., Golbeck J.H. & Matysik J. (2012), Whole Cell Nuclear Magnetic Resonance Characterization of Two Photochemically Active States of the Photosynthetic Reaction Center in Heliobacteria, Biochemistry 51(29): 5763-5773.
- Bode B.E., Thamarath Surendran S., Sai Sankar Gupta K.B., Alia A., Jeschke G. & Matysik J. (2012), The Solid-State Photo-CIDNP Effect and Its Analytical Application. Photo-CIDNP MAS NMR to Study Radical Pairs. In: Kuhn L. (red.), Hyperpolarization Methods in NMR Spectroscopy. Topics in Current Chemistry nr. 338. Berlin Heidelberg: Springer Verlag. 105-121.
- Ali S., Alia A., Champagne D.L. & Richardson M.K. (2011), Large-scale analysis of acute ethanol exposure in zebrafish development: a critical time window and resilience, PLoS ONE 6(5): e20037.
- Alia A. & Buchem M.A. van (2011), Prospects of Magnetic Resonance Imaging for Alzheimer's Disease, Current Medical Imaging Reviews 7(1): 1-2.
- Vermeij W.P., Alia A. & Backendorf C.M.P. (2011), ROS Quenching Potential of the Epidermal Cornified Cell Envelope, Journal of Investigative Dermatology 131(7): 1435-1441.
- Daviso E., Janssen G.J., Alia A., Jeschke G., Matysik J. & Tessari M. (2011), A 10 000-fold Nuclear Hyperpolarization of a Membrane Protein in the Liquid Phase via Solid-State Mechanism, Journal of the American Chemical Society 133(42): 16754-16757.
- Haud N., Kara F., Diekmann S., Henneke M., Willer J.R., Hillwig M.S., Gregg R.G., MacIntosh G.C., Gartner J., Alia A. & Hurlstone A.F.L. (2011), rnaset2 mutant zebrafish model familial cystic leukoencephalopathy and reveal a role for RNase T2 in degrading ribosomal RNA, Proceedings of the National Academy of Sciences 108(3): 1099-1103.
- Kara F., Braakman N., Buchem M.A. van, Groot H.J.M. de & Alia A. (2011), Prospects of Magnetic Resonance Spectroscopy in Mouse Models of Alzheimer's Disease, Current Medical Imaging Reviews 7(1): 80-87.
- Bagowski C.P., Bertola L.D., Schoonheere E., Wilms I., Kabli S., Alia A. & Groot H.J.M. de (2011), Effects of hypoxia on buoyancy control and the development of lordosis in physostomous and physoclistous fish species, Research & Reviews in BioSciences 5(1): 1-7.
- Daviso E., Prakash S., Alia A., Gast P., Jeschke G. & Matysik J. (2010), Nanosecond-Flash N-15 Photo-CIDNP MAS NMR on reaction centers of Rhodobacter sphaeroides R26, Applied Magnetic Resonance 37: 49-63.
- Duijn S. van, Kara F., Braakman N., Duinen S.G. van, Natte R., Buchem M.A. van & Alia A. (2010), 2D L-Cosy MR spectroscopy detects very early changes in the brain of Alzheimer mouse. Joint Annual Meeting of the ISMRM 1 mei 2010 - 7 mei 2010. Proc.Intl.Soc.Mag.Reson.Med.. Concord, U.S.A.: ISMRM. 4257.
- Daviso E., Diller A., Gast P., Alia A., Lugtenburg J., Müller M.G. & Matysik J. (2010), Action spectroscopy on dense samples of photosynthetic reaction centers of Rhodobacter sphaeroides WT based on nanosecond laser-flash C-13 Photo-CIDNP MAS NMR, Applied Magnetic Resonance 38: 105-116.
- Kabli S., Shuning H., Spaink H.P., Hurlstone A., Snaar-Jagalska B.E., Groot H.J.M. de & Alia A. (2010), In vivo magnetic resonance imaging to detect malignant melanoma in adult zebrafish, Zebrafish 7(2): 143-148.
- Janssen G.J., Daviso E., Van Son M., Groot H.J.M. de, Alia A. & Matysik J. (2010), Observation of the solid-state photo-CIDNP effect in entire cells of cyanobacteria Synechocystis, Photosynthesis Research 104(2-3): 275-282.
- Kara F., Braakman N., Buchem M.A. van, Groot H.J.M. de, Schliebs R. & Alia A. (2010), In vivo longitudinal monitoring of blood flow alterations in TG2576 mouse model of Alzheimer's Disease, 2010 ISMRM Meeting proceedings. Joint Annual Meeting of the ISMRM 1 mei 2010 - 7 mei 2010. Proc.Intl.Soc.Mag.Reson.Med. 4273.
- Kara F. & Alia A. (2010), Magnetic resonance angiography of the mouse cerebrovascular system at 17.6 T. . Proc.Intl.Soc.Mag.Reson.Med.
- Braakman N., Buchem M.A. van, Schliebs R., Groot H.J.M. de & Alia A. (2009), Recent Advances in Visualizing Alzheimer's Plaques by Magnetic Resonance Imaging, Current Medical Imaging Reviews 5(1): 2-9.
- Kabli S., Spaink H.P., Groot H.J.M. de & Alia A. (2009), In Vivo metabolite profile of adult zebrafish brain obtained by high-resolution localized magnetic resonance spectroscopy, Journal of Magnetic Resonance Imaging 29(2): 275-281.
- Alia A., Ganapathy S. & Groot H.J.M. de (2009), Magic Angle Spinning (MAS) NMR: a new tool to study the spatial and electronic structure of photosynthetic complexes, Photosynthesis Research 102(2): 415-425.
- Muskulus M., Scheenstra A.E.H., Braakman N., Dijkstra J., Verduyn Lunel S.M., Alia A., Groot H.J.M. de & Reiber J.H. (2009), Prospects for early detection of Alzheimer's disease from serial MR images in transgenic mouse models, Current Alzheimer Research 6(6): 503-518.
- Alia A., Wawrzyniak P.K., Janssen G.J., Buda F., Matysik J. & Groot H.J.M. de (2009), Differential charge polarization of axial histidines in bacterial reaction centers balances the asymmetry of the special pair, Journal of the American Chemical Society 131(28): 9626-9627.
- Daviso E., Alia A., Prakash S., Diller A., Gast P., Lugtenburg J., Matysik J. & Jeschke G. (2009), Electron-nuclear spin dynamics in a bacterial photosynthetic reaction center, The Journal of Physical Chemistry Part C 113(23): 10269-10278.
- Braakman N., Kara F., Buchem M.A. van, Schliebs R., Groot H.J.M. de & Alia A. (2009), In vivo localized two dimensional MR spectroscopy to compare the neurochemical profile in wild-type and transgenic mouse of Alzheimer’s disease, Proceedings of the 17th Annual ISMRM Scientific Meeting and Exhibition 2009. 17th Annual ISMRM Scientific Meeting and Exhibition 2009 18 april 2009 - 24 april 2009. Berkeley, California: International Society for Magnetic Resonance in Medicine. 1671-1671.
- Daviso E., Prakash S., Alia A., Gast P., Neugebauer J., Jeschke G. & Matysik J. (2009), The electronic structure of the primary electron donor of reaction centers of purple bacteria at atomic resolution as observed by photo-CIDNP C-13 NMR, Proceedings of the National Academy of Sciences 106(52): 22281-22286.
- Roy E., Rohmer T., Gast P., Jeschke G., Alia A. & Matysik J. (2008), Characterization of the primary radical pair in reaction centers of heliobacillus mobilis by 13C Photo-CIDNP MAS NMR, Biochemistry 47(16): 4629-4635.
- Wawrzyniak P.K., Alia A., Schaap R.G., Heemskerk M.M., Groot H.J.M. de & Buda F. (2008), Protein-induced geometric constraints and charge transfer in bacteriochlorophyll-histidine complexes in LH2, Physical Chemistry Chemical Physics 10(46): 6971-6978.
- Diller A., Alia A., Gast P., Groot H.J.M. de, Glaubitz C., Jeschke G. & Matysik J. (2008), 13C Photo-CIDNP MAS NMR studies on oriented reaction centers. In: Allen J.F., Gantt E., Golbeck J.H. & Osmond B. (red.), Photosynthesis. energy of sun: 14th international congress on photosynthesis research 2007. Dordrecht: Springer. 97-100.
- Braakman N., Oerther T., Groot H.J.M. de & Alia A. (2008), High resolution localized two-dimensional MR spectroscopy in mouse brain in vivo, Magnetic Resonance in Medicine 60(2): 449-456.
- Diller A., Alia A., Roy E., Gast P., Groot H.J.M. de, Gorkom H.J. van, Jeschke G., Glaubitz C. & Matysik J. (2007), The origin of the high redox force of photosystem II, a photo-CIDNP MAS NMR analysis, Photosynthesis Research 91(2-3): 150.
- Alia A., Wawrzyniak P.K., Buda F., Matysik J. & Groot H.J.M. de (2007), Electronic structure of axial histidines in photosynthetic reaction centres of Rhodobacter sphaeroides, Photosynthesis Research 91(2-3): 146-147.
- Roy E., Alia A., Gast P., Gorkom H.J. van, Groot H.J.M. de, Jeschke G. & Matysik J. (2007), Photochemically induced dynamic nuclear polarization observed in the reaction center of the green sulphur bacteria Chlorobium tepidum by 13C MAS NMR, Biochimica et Biophysica Acta (BBA) - Bioenergetics 1767(6): 610-615.
- Diller A., Prakash S., Alia A., Gast P., Matysik J. & Jeschke G. (2007), Signals in solid-state photochemically induced dynamic nuclear polarization recover faster than signals obtained with the longitudinal relaxation time, Journal of Physical Chemistry B 111(35): 10606-10614.
- Roy E., Alia A., Gast P., Groot H.J.M. de, Jeschke G., Gorkom H.J. van & Matysik J. (2007), Photochemically induced dynamic nuclear polarization studies on photosynthetic reaction centers from diverse organisms, Photosynthesis Research 91: 151-151.
- Prakash S., Alia A., Gast P., Groot H.J.M. de, Jeschke G. & Matysik J. (2007), 13C chemical shift map of the active cofactors in photosynthetic reaction centers of Rhodobacter sphaeroides revealed by photo-CIDNP MAS NMR, Biochemistry 46(31): 8953-8960.
- Diller A., Roy E., Gast P., Gorkom H.J. van, Groot H.J.M. de, Glaubitz C., Jeschke G., Matysik J. & Alia A. (2007), 15N-photochemically induced dynamic nuclear polarization magic-angle spinning NMR analysis of the electron donor of photosystem II, Proceedings of the National Academy of Sciences 104(31): 12767-12771.
- Diller A., Alia A., Gast P., Jeschke G. & Matysik J. (2007), 13C Photo-CIDNP MAS NMR on the LH1-RC complex of Rhodopseudomonas acidophila. Allen J.F. (red.), Photosynthesis. Energy from the Sun. . 14th International Congress on Photosynthesis 1 juli 2007 - 4 juli 2007. Dordrecht: Springer. 54-54.
- Daviso E., Sai Sankar Gupta K.B., Prakash S., Gast P., Alia A., Jeschke G. & Matysik J. (2007), 15N photo-CIDNP MAS NMR on RCs of Rhodobacter sphaeroides WT and R26. Allen J.F., Gantt E., Golbeck J.H. & Osmond B. (red.), Photosynthesis. Energy from the Sun: 14th International Congress on Photosynthesis Research 2007. 14th International Congress on Photosynthesis 1 juli 2007 - 4 juli 2007. Dordrecht: Springer. 21-24.
- Roy E., Diller A., Alia A., Gast P., Gorkom H.J. van, Groot H.J.M. de, Jeschke G. & Matysik J. (2006), Magnetic field dependence of 13C photo-CIDNP MAS NMR in plant photosystems I and II, Applied Magnetic Resonance 31: 193.
- Kabli S., Alia A., Spaink H.P., Verbeek F.J. & Groot H.J.M. de (2006), Magnetic resonance microscopy of the adult zebrafish, Zebrafish 3(4): 431-439.
- Prakash S., Alia A., Gast P., Groot H.J.M. de, Matysik J. & Jeschke G. (2006), Photo-CIDNP MAS NMR in intact cells of Rhodobacter sphaeroides R26: molecular and atomic resolution at nanomolar concentration?, Journal of the American Chemical Society 128(39): 12794-12799.
- Braakman N., Matysik J., Duinen S.G. van, Verbeek F.J., Schlebs R., Groot H.J.M. de & Alia A. (2006), Longitudinal assessment of Alzheimer's beta-amyloid plaquedevelopment in transgenic mice monitored by in vivo magnetic resonance microimaging, Journal of Magnetic Resonance Imaging 24(3): 530-536.
- Diller A., Alia A., Roy E., Gorkom H.J. van, Zaanen J., Groot H.J.M. de, Glaubitz C., Matysik J. & Gast P. (2005), Photo-CIDNP solid-state NMR on photosystems I and II: what makes P680 special?, Photosynthesis Research 84(1-3): 303-308.
- Prakash S., Alia A., Gast P., Groot H.J.M. de, Jeschke G. & Matysik J. (2005), Magnetic field dependence of photo-CIDNP MAS NMR on photosynthetic reaction centers of Rhodobacter sphaeroides WT, Journal of the American Chemical Society 127(41): 14290-14298.
- Alia A., Roy E., Gast P., Gorkom H.J. van, Groot H.J.M. de, Jeschke G. & Matysik J. (2004), Photochemically induced dynamic nuclear polarization in Photosystem I of plants observed by 13C magic-angle spinning NMR, Journal of the American Chemical Society 126(40): 12819-12826.
- Alia A., Matysik J., Boer I. de, Gast P., Gorkom H.J. van & Groot H.J.M. de (2004), Heteronuclear 2D (1H-13C) MAS NMR resolves the electronic structure of coordinated histidines in light-harvesting complex II: assessment of charge transfer and electronic delocatlization effect, Journal of Biomolecular NMR 28(2): 157-164.
- Prakash S., Alia A., Gast P., Jeschke G., Groot H.J.M. de & Matysik J. (2003), Photochemically induced dynamic nuclear polarisation in entire bacterial photosynthetic units observed by C-13 magic-angle spinning NMR, Journal of Molecular Structure 661-662: 625-633.
- Alia A., Hulsebosch B., Gorkom H.J. van, Raap J., Lugtenburg J., Matysik J., Groot H.J.M. de & Gast P. (2003), Probing the electronic structure of tyrosine radial Y-D (center dot) in photosystem II by EPR spectroscopy using site specific isotope labelling in Spirodela oligorrhiza, Chemical Physics 294(3): 459-469.
- Schulten E.A.M., Matysik J., Alia A., Kiihne S.R., Raap J., Lugtenburg J., Gast P., Hoff A.J. & Groot H.J.M. de (2002), 13C MAS NMR and photo-CIDNP reveal a pronounced assymetry in the electron ground state of the special pair of Rhodobacter spearoides reaction centers, Biochemistry 41(27): 8708-8717.
- Matysik J., Alia A., Bhalu B. & Mohanty P. (2002), Molecular Mechanisms of Quenching of Reactive Oxygen Species by Proline Under Stress in Plants, Current Science 82(5): 525-532.
- Alia A., Matysik J., Soede-Huijbregts C., Baldus M., Raap J., Lugtenburg J., Gast P., Gorkom H.J. van, Hoff A.J. & Groot H.J.M. de (2001), Ultrahigh field MAS NMR dipolar correlation spectroscopy of the histidine residues in light-harvesting complex II from photosynthetic bacteria levels partial internal charge transfer in the B850/his complex, Journal of the American Chemical Society 123(20): 4803-4809.
- Matysik J., Alia A., Gast P., Lugtenburg J., Hoff A.J. & Groot H.J.M. de (2001), Photochemically Induced Dynamic Nuclear Polarization in Bacterial Photosynthetic Reaction Centers Observed by 13C Solid State NMR. In: Kiihne S.R. & Groot H.J.M. de (red.), Perspectives on Solid State NMR in Biology. Focus on Structural Biology nr. 1. Dordrecht, The Netherlands: Springer. 215-225.
- Alia A., Mohanty P. & Matysik J. (2001), Effect of Proline on the Production of Singlet Oxygen, Amino Acids 21(2): 195-200.
- Matysik J. & Alia A. (2001), The Photophysics and Photochemistry of Cytochrome-C Oxidase. In: Pardha Saradhi P. (red.), Biophysical Processes in Living Systems. Enfield: Science Publishers Inc..
- Matysik J., Schulten E., Alia A., Gast P., Raap J., Lugtenburg J., Hoff A.J. & Groot H.J.M. de (2001), Photo-CIDNP 13C magic angle spinning NMR on bacterial reaction centres: exploring the electronic structure of the special pair and its surroundings, Biological Chemistry 382(8): 1271-1276.
- Matysik J., Alia A., Gast P., Gorkom H.J. van, Groot H.J.M. de & Hoff A.J. (2000), Photochemically induced nuclear spin polarization in reaction centers of photosystem II observed by 13C-solid-state NMR reveals a strongly asymmetric electronic structure of the P680.+ primary donor chlorophyll, Proceedings of the National Academy of Sciences 97(18): 9865-9870.
- Alia A., Matysik J., Erkelens C., Hulsbergen F.B., Gast P., Lugtenburg J. & Groot H.J.M. de (2000), Bacteriochlorophyll/imidazole and chlorophyll/imidazole complexes are negatively charged in an apolar environment, Chemical Physics Letters 330(3-4): 325-330.
- Matysik J., Alia A., Hollander J.G., Egorova T., Gast P. & Groot H.J.M. de (2000), A set-up to study photochemically induced dynamic nuclear polarization in photosynthetic reaction centres by solid-state NMR, Indian Journal of Biochemistry and Biophysics 37(5): 418-423.
- Alia A., Matysik J., Soede-Huijbregts C., Gast P., Raap J., Lugtenburg J., Groot H.J.M. de & Gorkom H.J. van (1998), Selective 15N-isotope labelling of histidines in PSII reaction centers of Spirodela oligorrhiza. In: Garab G. (red.), Photosynthesis: Mechanisms and Effects nr. II. Dordrecht, The Netherlands: Kluwer Academic Publishers. 1009-1012.
- Matysik J., Alia A., Gorkom H.J. van & Groot H.J.M. de (1998), Substitution of calcium by cadmium in Photosystem II complex. In: Garab G. (red.), Photosynthesis: Mechanisms and Effects, Vol. II. Dordrecht, The Netherlands: Kluwer Academic Publishers. 1423-1426.
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