Emilia Hannula
Universitair hoofddocent
- Naam
- Dr. S.E. Hannula
- Telefoon
- 071 5277489
- s.e.hannula@cml.leidenuniv.nl
Zie meer informatie op de Engelse versie.
Universitair hoofddocent
- CML
- Environmental Biology
- Lentendu G., Singer D., Agatha S., Bahram M., Hannula S.E., Helder J., Tedersoo L., Traunspurger W., Geisen S. & Lara E. (2025), EukFunc: a holistic eukaryotic functional reference for automated profiling of soil eukaryotes, Molecular Ecology Resources 25(7): e14118.
- Rasool S., Groos M., Hannula S.E. & Biere A. (2025), Bioinoculant-induced plant resistance is modulated by interactions with resident soil microbes, Environmental Microbiome 20: 7.
- Hou Z., Wang M., Xu H., Wang M. & Hannula S.E. (2025), Differential effects of pine wilt disease on root endosphere, rhizosphere, and soil microbiome of Korean white pine, Microbiology Spectrum 13(4): e02326-24.
- Hannula S.E. & Veen G.F. (2025), Drought has short-term effects on soil fungal communities leading to long-term effects on soil functions, Soil Biology & Biochemistry 209: 109893.
- Goede S.P.C. de, Hannula S.E., Jansen B. & Morrien E. (2025), Fungal-mediated soil aggregation as a mechanism for carbon stabilization, The ISME Journal 19(1): wraf074.
- Sveen T.R., Viketoft M., Bengtsson J., Strengbom J., Lejoly J., Buegger F., Pritsch K., Fritscher J., Hildebrand F., Osburn E., Hannula S.E. & Bahram M. (2025), Functional diversity of soil microbial communities increases with ecosystem development, Nature Communications 16: 10408.
- Wang R., Kandemir A.H., Zhang J., Bezemer T.M., Bodegom P.M. van & Hannula S.E. (2025), Low mycovirus presence in soil saprotrophic fungi in Dutch sandy soils, European Journal of Soil Biology 127: 103787.
- Ranheim Sveen T., Hannula S.E. & Bahram M (2024), Microbial regulation of feedbacks to ecosystem change, Trends in Microbiology 32(1): 68-78.
- Marselis S.M., Hannula S.E., Trimbos K.B., Berg M.P., Bodelier P.L.E., Declerck S.A.J., Erisman J.W., Kuramae E.E., Nanu A., Veen G.F., Zelfde M. van 't & Schrama M.J.J. (2024), The use of living labs to advance agro-ecological theory in the transition towards sustainable land use: a tale of two polders, Environmental Impact Assessment Review 108: 107588.
- Gao C., Hannula S.E., Bodegom P.M. van, Bezemer T.M., Vries F.T. de, Hassink J., Zandt M.H. in 't & Moinet G.Y.K (2024), Land use intensity differently affects soil microbial functional communities in arable fields, Applied Soil Ecology 204: 105723.
- Neuenkamp L., García de León D., Hamer U., Hölzel N., McGale E. & Hannula S.E. (2024), Comprehensive tools for ecological restoration of soils foster sustainable use and resilience of agricultural land, Communications Biology 7: 1577.
- Mioulet C., Schrama M.J.J., Berg M.P. & Hannula S.E. (2024), Comparison of metrics to reveal the role of soil fauna in soil health assessment in peat meadow restoration, European Journal of Soil Science 75(6): e70018.
- Frac M., Jedryczka M. & Hannula S.E. (2023), Editorial: Soil fungal biodiversity for plant and soil health, volume II, Frontiers in Microbiology 14: 1170312.
- Rasool S., Markou A, Hannula S.E. & Biere A. (2023), Effects of tomato inoculation with the entomopathogenic fungus Metarhizium brunneum on spider mite resistance and the rhizosphere microbial community, Frontiers in Microbiology 14: 1197770.
- Nannipieri P., Hannula S.E., Pietramellara G., Schloter M., Sizmur T. & Pathan S. (2023), Legacy effects of rhizodeposits on soil microbiomes: a perspective, Soil Biology and Biochemistry 184: 109107.
- Hannula S.E., Jongen R. & Morrien E. (2023), Grazing by collembola controls fungal induced soil aggregation, Fungal Ecology 65: 101284.
- Thakur M., Sloot M. van der, Wilschut R., Hannula S.E, Hooven F. ten, Geisen S., Quist C., Steinauer K. & Putten W. van der (2023), Soil legacies of extreme droughts enhance the performance of invading plants. bioRxiv. [working paper].
- Heffner T., Brami S.A., Mendes L.W., Kaupper T., Hannula S.E., Poehlein A., Horn M. A. & Ho A. (2023), Interkingdom interaction: the soil isopod Porcellio scaber stimulates the methane-driven bacterial and fungal interaction, ISME Communications 3(1): 62.
- Long J.R. de, Heinen R., Hannula S.E., Jongen R., Steinauer K. & Bezemer T.M. (2023), Plant-litter-soil feedbacks in common grass species are slightly negative and only marginally modified by litter exposed to insect herbivory, Plant and Soil 485: 227-244.
- Clocchiatti A., Hannula S.E., Hundscheid M., Gunnewiek P. klein & Boer W. de (2023), Utilizing woody materials for fungal-based management of soil nitrogen pools, Applied Soil Ecology 181: 104663.
- Rallo P., Hannula S.E., Hooven F.C. ten, Verhoeven K.J.F., Kammenga J. & Putten W.H. van der (2023), Inter- and intraspecific plant-soil feedbacks of grass species, Plant and Soil 486: 575-586.
- Steinauer K., Thakur M.P., Hannula S.E., Weinhold A., Uthe H., Dam N.M. van & Bezemer T.M. (2023), Root exudates and rhizosphere microbiomes jointly determine temporal shifts in plant‐soil feedbacks, Plant, Cell and Environment 46(6): 1885-1899.
- Hannula S.E. Morriën E. (2022), Will fungi solve the carbon dilemma?, Geoderma 413: 115767.
- Huberty M.D., Steinauer K., Heinen R., Jongen R., Hannula S.E., Choi Y.H. & Bezemer T.M. (2022), Temporal changes in plant soil feedback effects on microbial networks, leaf metabolomics and plant-insect interactions, Journal of Ecology 110(6): 1328-1343.
- Chaudhary V.B., Holland E.P., Charman-Anderson S., Guzman A., Bell-Dereske L., Cheeke T.E., Corrales A., Duchicela J., Egan C., Gupta M.M., Hannula S.E. , Hestrin R., Hoosein S., Kumar K., Mhretu G., Neuenkamp L., Soti P., Xie Y. & Helgason T. (2022), What are mycorrhizal traits?, Trends in Ecology & Evolution 37(7): 573-581.
- Wilschut R., Long J.R. de, Geisen S., Hannula S.E., Quist C.W., Snoek B., Steinauer K., Wubs E.R.J., Yang Q. & Thakur M.P. (2022), Combined effects of warming and drought on plant biomass depend on plant woodiness and community type: a meta-analysis, Proceedings of the Royal Society B: Biological Sciences 289(1984): 20221178.
- Crotty F., Hannula S.E., Hallama M. & Kandeler E. (2022), Can soil improving cropping systems reduce the loss of soil biodiversity within agricultural soils?. In: Reyes-Sánchez L.B., Horn R. & Costantini E.A.C (red.), Sustainable soil management as a key to preserving soil biodiversity and stopping its degradation: International Union of Soil Sciences (IUSS). 187-220.
- Frac M., Hannula E.S., Belka M., Salles J.F. & Jedryczka M. (2022), Soil mycobiome in sustainable agriculture, Frontiers in Microbiology 13: 1033824.
- Long J.R. de, Heinen R., Jongen R., Hannula S.E., Huberty M.D., Kielak A.M., Steinauer K. & Bezemer T.M. (2021), How plant–soil feedbacks influence the next generation of plants, Ecological Research 36(1): 32-44.
- De Castro F., Adl S.M., Allesina S., Bardgett R.D., Bolger T., Dalzell J.J., Emmerson M., Fleming T., Garlaschelli D., Grilli J., Hannula S.E., De Vries F., Lindo Z., Maule A.G., Opik M., Rillig M.C., Veresoglou S.D., Wall D.H. & Caruso T. (2021), Local stability properties of complex, species‐rich soil food webs with functional block structure, Ecology and Evolution 11(22): 16070-16081.
- Hannula S.E., Heinen R., Huberty M.D., Steinauer K., Long J.R. de, Jongen R. & Bezemer T.M. (2021), Persistence of plant-mediated microbial soil legacy effects in soil and inside roots, Nature Communications 12: 5686 .
- Jongen R., Hannula S.E., Long J.R. de, Heinen R., Huberty M.D., Steinauer K. & Bezemer T.M. (2021), Plant community legacy effects on nutrient cycling, fungal decomposer community and decomposition in a temperate grassland, Soil Biology & Biochemistry 163: 108450.
- Ochoa-Hueso R., Delgado-Baquerizo M., Risch A.C., Schrama M.J.J., Morriën E., Barmentlo S.H., Geisen S., Hannula S.E., Resch M.C., Snoek Basten L. & Putten W.H. van der (2021), Ecosystem coupling: a unifying framework to understand the functioning and recovery of ecosystems, One Earth 4(7): 951-966.
- Gomes S.I.F., Kielak A.M., Hannula S.E., Heinen R., Jongen R., Keesmaat I., Long J.R. de & Bezemer T.M. (2020), Microbiomes of a specialist caterpillar are consistent across different habitats but also resemble the local soil microbial communities, Animal Microbiome 2: 37.
- Hannula S.E., Ma H., Pérez-Jaramillo J.E., Pineda A. & Bezemer T.M. (2020), Structure and ecological function of the soil microbiome affecting plant-soil feedbacks in the presence of a soil-borne pathogen , Environmental Microbiology 22(2): 660-676.
- Heinen R., Hannula S.E., Long J.R. de, Huberty M.D., Jongen R., Kielak A., Steinauer K., Zhu F. & Bezemer T.M. (2020), Plant community composition steers grassland vegetation via soil legacy effects, Ecology Letters 23(6): 973-982.
- Li Y., Veen G.F., Hol W.H.G., Vandenbrande S., Hannula S.E., Hooven F.C. ten, Li Q., Liang W. & Bezemer T.M. (2020), ‘Home’ and ‘away’ litter decomposition depends on the size fractions of the soil biotic community, Soil Biology & Biochemistry 144: 107783.
- Ma H., Pineda A., Hannula S.E., Kielak A.M., Setyarini S.N. & Bezemer T.M. (2020), Steering root microbiomes of a commercial horticultural crop with plant-soil feedbacks, Applied Soil Ecology 150: 103468.
- Pangesti N., Pineda A., Hannula S.E. & Bezemer T.M. (2020), Soil inoculation alters the endosphere microbiome of chrysanthemum roots and leaves, Plant and Soil 455: 107-119.
- Pineda A., Kaplan I., Hannula S.E., Ghanem W. & Bezemer T.M. (2020), Conditioning the soil microbiome through plant–soil feedbacks suppresses an aboveground insect pest, New Phytologist 226(2): 595-608.
- Steinauer K., Heinen R., Hannula S.E., Long J.R. de, Huberty M.D., Jongen R., Wang M. & Bezemer T.M. (2020), Above‐belowground linkages of functionally dissimilar plant communities and soil properties in a grassland experiment, Ecosphere 11(9): e03246.
- Long J.R. de, Heinen R., Steinauer K., Hannula S.E., Huberty M.D, Jongen R., Vandenbrande S., Wang M., Zhu F. & Bezemer T.M. (2019), Taking plant–soil feedbacks to the field in a temperate grassland, Basic and Applied Ecology 40: 30-42.
- Hannula S.E., Zhu F., Heinen R. & Bezemer T.M. (2019), Foliar-feeding insects acquire microbiomes from the soil rather than the host plant, Nature Communications 10: 1254.
- Wang M., Ruan W., Kostenko O., Carvalho S., Hannula S.E., Mulder P.P.J., Bu F., Putten W.H. van der & Bezemer T.M. (2019), Removal of soil biota alters soil feedback effects on plant growth and defense chemistry, New Phytologist 221(3): 1478-1491.
- Hannula S.E., Kielak A.M., Steinauer K., Huberty M., Jongen R., Long J.R. de, Heinen R. & Bezemer T.M. (2019), Time after time: temporal variation in the effects of grass and forb species on soil bacterial and fungal communities, mBio 10(6): e02635.
- Hannula E., Ma H., Pineda A. & Bezemer T.M. (2018), Sturen van bodemmicrobiomen voor plantgezondheid in de tuinbouw, Gewasbescherming 49(2): 64.
- Hannula S.E., Morriën E., Hollander M. de, Putten W.H. van der, Veen J.A. van & Boer W. de (2017), Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture, The ISME Journal 11(10): 2294-2304.
- Morriën E., Hannula S.E., Snoek L.B., Helmsing N.R., Zweers H., Hollander M. de, Soto R.L., Bouffaud M.L., Buée M., Dimmers W., Duyts H., Geisen S., Girlanda M., Griffiths R.I., Jorgensen H.B., Jensen J., Plassart P., Redecker D., Schmelz Rüdinger M., Schmidt O., Thomson B.C., Tisserant E., Uroz S., Winding A., Bailey M.J., Bonkowski M., Faber J.H., Martin F., Lemanceau P., Boer W. de, Veen J.A. van & Putten W.H. van der (2017), Soil networks become more connected and take up more carbon as nature restoration progresses, Nature Communications 8: 14349.
- Hannula S.E. & Veen J.A. van (2016), Primer sets developed for functional genes reveal shifts in functionality of fungal community in soils, Frontiers in Microbiology 7: 1897.
- Hannula S.E., Boer W. de, Baldrian P. & Veen J.A. van (2013), Effect of genetic modification of potato starch on decomposition of leaves and tubers and on fungal decomposer communities, Soil Biology & Biochemistry 58: 88-98.
- Hannula S.E., Boschker H.T.S., Boer W. de & Veen J.A. van (2012), 13C pulse-labeling assessment of the community structure of active fungi in the rhizosphere of a genetically starch-modified potato (Solanum tuberosum) cultivar and its parental isoline, New Phytologist 194(3): 784-799.
- Hannula S.E., Boer W. de & Veen J.A. van (2010), In situ dynamics of soil fungal communities under different genotypes of potato, including a genetically modified cultivar, Soil Biology & Biochemistry 42(12): 2211-2223.