Jasper Knoester
Dean / Professor
- Name
- Prof.dr. J. Knoester
- Telephone
- +31 71 527 4763
- dean@science.leidenuniv.nl
Prof. dr. Jasper Knoester is Dean of the Faculty of Science. He studied Theoretical Physics and also obtained a PhD in it.
More information about Jasper Knoester
Members Faculty Board
Short CV
Prof. Jasper Knoester studied Theoretical Physics at Utrecht University from 1977 to 1983. He completed his PhD in Theoretical Physics on 1 June 1987, also at Utrecht University. After his PhD, he moved to the United States where he did a postdoc at the University of Rochester.
In 1989, he returned to the Netherlands to do research at the University of Groningen. In 1993, he became Professor of the Theory of Condensed Matter. From 2003 to 2009, he took on the role of scientific director for the Zernike Institute for Advanced Materials in Groningen. And from 2010 to 2021, he was Dean of the Faculty of Science and Engineering at the University of Groningen. As of January 2022, he is dean of the Faculty of Science in Leiden.
Dean / Professor
- Science
- Bedrijfsvoering
- Faculteitsbureau
- Kunsel T., Jansen T.L.C. & Knoester J. (2021), Scaling relations of exciton diffusion in linear aggregates with static and dynamic disorder, Journal of Chemical Physics 155(13): 134305.
- Kunsel T., Guenther L.M., Koehler J., Jansen T.L.C. & Knoester J. (2021), Probing size variations of molecular aggregates inside chlorosomes using single-object spectroscopy, Journal of Chemical Physics 155(12): 124310.
- Günther L.M., Knoester J. & Köhler J. (2021), Limitations of linear dichroism spectroscopy for elucidating structural issues of light-harvesting aggregates in chlorosomes, Molecules 26(4): 899.
- Nguyen H.L., Do T.N., Akhtar P., Jansen T.L.C., Knoester J., Wang W.D., Shen J.R., Lambrey P.H. & Tan H.S. (2021), An exciton dynamics model of Bryopsis corticulans light-harvesting complex II, Journal of Physical Chemistry B 125(4): 1134-1143.
- Bondarenko A.S., Patmanidis I., Allessandri R., Souza P.C.T., Jansen T.L.C., Vries A.H. de, Knoester J. & Marrink S. (2020), Multiscale modeling of molecular structure and optical properties of complex supramolecular aggregates, Chemical Science 11(42): 11514-11524.
- Kunsel T., Löhner A., Mayo J.J., Köhler J., Jansen T.L.C. & Knoester J. (2020), Unraveling intra-aggregate structural disorder using single-molecule spectroscopy, The Journal of Chemical Physics 153(13): 134304.
- Kriete B., Bondarenko A.S., Alessandri R., Patmanidis I., Krasnikov V.V., Jansen T.L.C., Marrink S.J., Knoester J. & Pshenichnikov M.S. (2020), Molecular versus excitonic disorder in individual artificial light-harvesting systems, Journal of the American Chemical Society 142(42): 18073-18085.
- Nugroho B.S., Iskandar A.A., Malyshev V.A. & Knoester J. (2020), Plasmon-assisted two-photon absorption in a semiconductor quantum dot–metallic nanoshell composite, Physical Review B 102(4): 045405.
- Bondarenko A.S., Jansen T.L.C. & Knoester J. (2020), Exciton localization in tubular molecular aggregates: size effects and optical response, The Journal of Chemical Physics 152(19): 194302.
- Bondarenko A.S., Knoester J. & Jansen T.L.C. (2020), Comparison of methods to study excitation energy transfer in molecular multichromophoric systems, Chemical Physics 529: 110478.
- Kriete B., Lüttig J., Kunsel T., Maly P., Jansen T.L.C., Knoester J., Brixner T. & Pshenichnikov M.S. (2019), Interplay between structural hierarchy and exciton diffusion in artificial light harvesting, Nature Communications 10: 4615.
- Löhner A., Kunsel T., Röhr M.I.S., Jansen T.L.C., Sengupta S., Würthner F., Knoester J. & Köhler J. (2019), Spectral and Structural Variations of Biomimetic Light-Harvesting Nanotubes, Journal of Physical Chemistry Letters 10(11): 2715-2724.
- Nugroho B.S., Iskandar A.A., Malyshev V.A. & Knoester J. (2019), Plasmon-assisted two-photon Rabi oscillations in a semiconductor quantum dot – metal nanoparticle heterodimer, Physical Review B 99(7): 075302.
- Günther L.M., Löhner A., Reiher C., Kunsel T., Jansen T.L.C., Tank M., Bryant D.A., Knoester J. & Köhler J. (2018), Structural variations in chlorosomes from wild-type and a bchQR mutant of Chlorobaculum tepidum revealed by single-molecule spectroscopy, Journal of Physical Chemistry B 122(26): 6712-6723.
- Thyrhaug E., Temperlaar R., Alcocer M.J.P., Zidek K., Bina D., Knoester J., Jansen T.L.C. & Zigmantas D. (2018), Identification and characterization of diverse coherences in the Fenna-Matthews-Olson complex, Nature Chemistry 10(7): 780-786.
- Farag M.H., Jansen T.L.C. & Knoester J. (2018), The origin of absorptive features in the two-dimensional electronic spectra of rhodopsin, Physical Chemistry Chemical Physics 20(18): 12746-12754.
- Compaijen P.J., Malyshev V.A. & Knoester J. (2018), Time-dependent transport of a localized surface plasmon through a linear array of metal nanoparticles: precursor and normal mode contributions, Physical Review B 97(8): 085428.
- Tempelaar R., Jansen T.L.C. & Knoester J. (2017), Exciton-exciton annihilation is coherently suppressed in H-aggregates, but not in J-aggregates, Journal of Physical Chemistry Letters 8(24): 6113-6117.
- Farag M.H., Hoenders B.J., Knoester J. & Jansen T.L.C. (2017), Spectral line shapes in linear absorption and two-dimensional spectroscopy with skewed frequency distributions, The Journal of Chemical Physics 146(23): 234201.
- Kriete B., Bondarenko A.S., Jumde V.R., Franken L.E., Minnaard A.J., Jansen T.L.C., Knoester J. & Pshenichnikov M.S. (2017), Steering self-assembly of amphiphilic molecular nanostructures via halogen exchange, Journal of Physical Chemistry Letters 8(13): 2895-2901.
- Wan Y., Stradomska A., Knoester J. & Huang L.B. (2017), Direct imaging of exciton transport in tubular porphyrin aggregates by ultrafast microscopy, Journal of the American Chemical Society 139(21): 7287-7293.
- Johnson P.J.M., Farag M.H., Halpin A., Morizumi T., Prokhorenko V.I., Knoester J., Jansen T.L.C., Ernst O.P. & Miller R.J.D. (2017), The primary photochemistry of vision occurs at the molecular speed limit, Journal of Physical Chemistry B 121(16): 4040-4047.
- Nugroho B.S., Iskandar A.A., Malyshev V.A. & Knoester J. (2017), Instabilities in the optical response of a semiconductor quantum dot-metal nanoparticle heterodimer: self-oscillations and chaos, Journal of Optics 19(1): 015004.
- Bloemsma E.A., Silvis M.H., Stradomska A. & Knoester J. (2016), Vibronic effects and destruction of exciton coherence in optical spectra of J-aggregates: a variational polaron transformation approach, Chemical Physics 481: 250-261.
- Farag M.H., Jansen T.L.C. & Knoester J. (2016), Probing the interstate coupling near a conical intersection by optical spectroscopy, Journal of Physical Chemistry Letters 7(17): 3328-3334.
- Günther L.M., Jendrny M., Bloemsma E.A., Tank M., Osstergetel G.T., Bryant D.A., Knoester J. & Köhler J. (2016), Structure of light-harvesting aggregates in individual chlorosomes, Journal of Physical Chemistry B 120(24): 5367-5376.
- Chuang C., Lee C.K., Moix J.M., Knoester J. & Cao J. (2016), Quantum diffusion on molecular tubes: universal scaling of the 1D to 2D transition, Physical Review Letters 116(19): 196803.
- Dijkstra A.G., Duan H.G., Knoester J., Nelson K.A. & Cao J. (2016), How two-dimensional brick layer J-aggregates differ from linear ones: excitonic properties and line broadening mechanisms, The Journal of Chemical Physics 144(13): 134310.
- Compaijen P.J., Malyshev V.A. & Knoester J. (2016), Elliptically polarized modes for the unidirectional excitation of surface plasmon polaritons, Optics Express 24(4): 3858-3872.
- Tempelaar R., Koster L.J.A., Havenith R.W.A., Knoester J. & Jansen T.L.C. (2016), Charge recombination suppressed by destructive quantum interference in heterojunction materials, Journal of Physical Chemistry Letters 7(1): 198-203.
- Broer W., Waalkens H., Svetovoy V.B., Knoester J. & Palasantzas G. (2015), Nonlinear actuation dynamics of driven Casimir oscillators with rough surfaces, Physical Review Applied 4(5): 054016.
- Tempelaar R., Halpin A., Johnson P.J.M., Cai J., Murphy R.S., Knoester J., Miller R.J.D. & Jansen T.L.C. (2016), Laser-limited signatures of quantum coherence, Journal of Physical Chemistry A 120(19): 3042-3048.
- Nugroho B.S., Malyshev V.A. & Knoester J. (2015), Tailoring optical response of a hybrid comprising a quantum dimer emitter strongly coupled to a metallic nanoparticle, Physical Review B 92(16): 165432.
- Hestand N.J., Tempelaar R., Knoester J., Jansen T.L.C. & Spano F.C. (2015), Exciton mobility control through sub-angstrom packing modifications in molecular crystals, Physical Review B 91(19): 195315.
- Bloemsma E.A., Vlaming S.M., Malyshev V.A. & Knoester J. (2015), Signature of anomalous exciton localization in the optical response of self-assembled organic nanotubes, Physical Review Letters 114(15): 156804.
- Compaijen P.J., Malyshev V.A. & Knoester J. (2015), Engineering plasmon dispersion relations: hybrid nanoparticle chain - substrate plasmon polaritons, Optics Express 23(3): 2280-2292.
- Vegte C.P. van der, Prajapati J.D., Kleinekathöfer U., Knoester J. & Jansen T.L.C. (2015), Atomistic modeling of two-dimensional electronic spectra and excited-state dynamics for a Light Harvesting 2 complex, Journal of Physical Chemistry B 119(4): 1302-1313.
- Tempelaar R., Jansen T.L.C. & Knoester J. (2014), Vibrational beatings conceal evidence of electronic coherence in the FMO light-harvesting complex, Journal of Physical Chemistry B 118(45): 12865-12872.
- Wan Y., Stradomska A., Fong S., Guo Z., Schaller R.D., Wiederrecht G.P., Knoester J. & Huang L.B. (2014), Exciton level structure and dynamics in tubular porphyrin aggregates, The Journal of Physical Chemistry C 118(43): 24854-24865.
- Eisele D.M., Arias D.H., Fu X., Bloemsma E.A., Steiner C.P., Jensen R.A., Rebentrost P., Eisele H., Tokmakoff A., Lloyd S., Nelson K.A., Nicastro D., Knoester J. & Bawendi M.G. (2014), Robust excitons inhabit soft supramolecular nanotubes, Proceedings of the National Academy of Sciences 111(33): E3367-E3375.
- Haverkort F., Stradomska A. & Knoester J. (2014), First-principles simulations of the initial phase of self-aggregation of a cyanine dye: structure and optical spectra, Journal of Physical Chemistry B 118(29): 8877-8890.
- Vegte C.P. van der, Knop S., Vohringer P., Knoester J. & Jansen T.L.C. (2014), OH-Stretching in synthetic hydrogen-bonded chains, Journal of Physical Chemistry B 118(23): 6256-6264.
- Jumer C.C., Anna J.M., Stradomska A., Schins J., Myahkostupov M., Prusakova V., Oblinsky D.G., Castellano F.N., Knoester J. & Scholes G.D. (2014), Intramolecular radiationless transitions dominate exciton relaxation dynamics, Chemical Physics Letters 599: 23-33.
- Tempelaar R., Spano F.C., Knoester J. & Jansen T.C. (2014), Mapping the evolution of spatial exciton coherence through time-resolved fluorescence, Journal of Physical Chemistry Letters 5(9): 1505-1510.
- Haverkort F., Stradomska A., Vries A.H. de & Knoester J. (2014), First-principles calculation of the optical properties of an amphiphilic cyanine dye aggregate, The Journal of Physical Chemistry A 118(6): 1012-1023.
- Halpin A., Johnson P.J.M., Tempelaar R., Murphy R.S., Knoester J., Jansen T.L.C. & Miller R.J.D. (2014), Two-dimensional spectroscopy of a molecular dimer unveils the effects of vibronic coupling on exciton coherences, Nature Chemistry 6(3): 196-201.
- Nugroho B.S., Iskandar A.A., Malyshev V.A. & Knoester J. (2013), Bistable optical response of a nanoparticle heterodimer: mechanism, phase diagram, and switching time, The Journal of Chemical Physics 139(1): 014303.
- Vlaming S.M., Malyshev V.A., Eisfeld A. & Knoester J. (2013), Subdiffusive exciton motion in systems with heavy-tailed disorder, The Journal of Chemical Physics 138(21): 214316.
- Compaijen P.J., Malyshev V.A. & Knoester J. (2013), Surface-mediated light transmission in metal nanoparticle chains, Physical Review B 87(20): 205437.
- Haverkort F., Stradomska A., Vries A.H. de & Knoester J. (2013), Investigating the structure of aggregates of an amphiphilic cyanine dye with molecular dynamics simulations, Journal of Physical Chemistry B 117(19): 5857-5867.
- Tempelaar R., Vegte C.P. van der, Knoester J. & Jansen T.L.C. (2013), Surface hopping modeling of two-dimensional spectra, The Journal of Chemical Physics 138(16): 164106.
- Broer W., Palasantzas G., Knoester J. & Svetovoy V.T. (2013), Significance of the Casimir force and surface roughness for actuation dynamics of MEMS, Physical Review B 87(12): 125413.
- Vegte C.P. van der, Dijkstra A.G., Knoester J. & Jansen T.L.C. (2013), Calculating two-dimensional spectra with the mixed quantum-classical Ehrenfest method, The Journal of Physical Chemistry A 117(29): 5970-5980.
- Liang C.W., Louhivuori M., Marrink S.J., Jansen T.L.C. & Knoester J. (2013), Vibrational spectra of a mechanosensitive channel, Journal of Physical Chemistry Letters 4(3): 448-452.
- Munárriz J., Malyshev A.V., Malyshev V.A. & Knoester J. (2013), Optical nanoantennas with tunable radiation patterns, Nano Letters 13(2): 444-450.
- Tempelaar R., Stradomska A., Knoester J. & Spano F.C. (2013), Anatomy of an exciton: vibrational distortion and exciton coherence in H- and J-aggregates, Journal of Physical Chemistry B 117(1): 457-466.
- Eisele D.M., Cone C.W., Bloemsma E.A., Vlaming S.M., Kwaak C.G.F. van der, Silbey R.J., Bawendi M.G., Knoester J., Rabe J.P. & Bout D.A. van den (2012), Utilizing redox-chemistry to elucidate the nature of exciton transitions in supramolecular dye nanotubes, Nature Chemistry 4(8): 655-662.
- Bloemsma E.A. & Knoester J. (2012), Photon emission statistics and photon tracking in single-molecule spectroscopy of molecular aggregates: dimers and trimers, The Journal of Chemical Physics 136(22): 224507.
- Liang C., Knoester J. & Jansen T.L.C. (2012), Proton transport in a membrane protein channel: two-dimensional infrared spectrum modeling, Journal of Physical Chemistry B 116(22): 6336-6345.
- Broer W., Palasantzas G., Knoester J. & Svetovoy V.B. (2012), Roughness correction to the Casimir force at short separations: contact distance and extreme value statistics, Physical Review B 85(15): 155410.
- Lessing J., Roy S., Reppert M., Baer M., Marx D., La Cour Jansen T., Knoester J. & Tokmakoff A. (2012), Identifying residual structure in intrinsically disordered systems: a 2D IR spectroscopic study of the GVGXPGVG peptide, Journal of the American Chemical Society 134(11): 5032-5035.
- Roy S., Lessing J., Meisl G., Ganim Z., Tokmakoff A., Knoester J. & Jansen T.L.C. (2011), Solvent and conformation dependence of amide I vibrations in peptides and proteins containing proline, The Journal of Chemical Physics 135(23): 234507.
- Marocico C.A. & Knoester J. (2011), Effect of surface-plasmon polaritons on spontaneous emission and intermolecular energy-transfer rates in multilayered geometries, Physical Review A 84(5): 053824.
- Tempelaar R., Stradomska A., Knoester J. & Spano F.C. (2011), Circularly polarized luminescence as a probe for long-range interactions in molecular aggregates, Journal of Physical Chemistry B 115(36): 10592-10603.
- Broer W., Palasantzas G., Knoester J. & Svetovov V.B. (2011), Roughness correction to the Casimir force beyond perturbation theory, Europhysics Letters 95(3): 30001.
- Olbrich C., Jansen T.L.C., Liebers J., Aghtar M., Strümpfer J., Schulten K., Knoester J. & Kleinekathöfer U. (2011), From atomistic modeling to excitation transfer and two-dimensional spectra of the FMO light-harvesting complex, Journal of Physical Chemistry B 115(26): 8609-8621.
- Chernyak V.Y., Knoester J. & Tretiak S. (2011), Tribute to Shaul Mukamel, Journal of Physical Chemistry B 115(18): 5037-5038.
- Vlaming S.M., Bloemsma E.A. & Linggarsari Nietiadi M. Knoester J. (2011), Disorder-induced exciton localization and violation of optical selection rules in supramolecular nanotubes, The Journal of Chemical Physics 134(11): 114507.
- Vlaming S.M., Bloemsma E.A., Nietiadi M. & Linggarsari Knoester J. (2011), Disorder-induced exciton localization and violation of optical selection rules in supramolecular nanotubes, The Journal of Chemical Physics 134(11): 114507.
- Liang C.W., Jansen T.L.C. & Knoester J. (2011), Proton transport in biological systems can be probed by two-dimensional infrared spectroscopy, The Journal of Chemical Physics 134(4): 044502.
- Dijkstra A.G., la Cour Jansen T. & Knoester J. (2011), Modeling the vibrational dynamics and nonlinear infrared spectra of coupled amide I and II modes in peptides, Journal of Physical Chemistry B 115(18): 5392-5401.
- Eisfeld A., Vlaming S.M., Malyshev V.A. & Knoester J. (2010), Excitons in molecular aggregates with Lévy-type disorder: anomalous localization and exchange broadening of optical spectra, Physical Review Letters 105(13): 137402.
- Augulis R., Malyshev A.V., Malyshev V.A., Puzlys A., Knoester J. & Loosdrecht P.H.M. van (2010), Quest for order in chaos: hidden repulsive level statistics in disordered quantum nanoaggregates, Journal of Physical Chemistry Letters 1(19): 2911-2916.
- Stradomksa A. & Knoester J. (2010), Shape of the Q band in the absorption spectra of porphyrin nanotubes: vibronic coupling or exciton effects?, The Journal of Chemical Physics 133(9): 094701.
- Smith A.W., Kessing J., Ganim Z., Peng C.S., Tokmakoff A., Roy S., Jansen T.L.C. & Knoester J. (2010), Melting of a β-hairpin peptide using isotope-edited 2D IR spectroscopy and simulations, Journal of Physical Chemistry B 114(34): 10913-10924.
- Dijkstra A.G., Jansen T.L.C. & Knoester J. (2010), Two-dimensional spectroscopy of extended molecular systems: applications to energy transport and relaxation in an α-helix, The Journal of Physical Chemistry A 114(27): 7315-7320.
- Roy S., Jansen T.L.C. & Knoester J. (2010), Structural classification of the amide I sites of a β-hairpin with isotope label 2DIR spectroscopy, Physical Chemistry Chemical Physics 12(32): 9347-9357.
- Eisele D.M., Knoester J., Kirstein S., Rabe J.P. & Bout D.A. Vanden (2009), Uniform exciton fluorescence from individual molecular nanotubes immobilized on solid substrates, Nature Nanotechnology 4(10): 658-663.
- Vlaming S.M., Malyshev V.A. & Knoester J. (2009), Localization properties of one-dimensional Frenkel excitons: Gaussian versus Lorentzian diagonal disorder, Physical Review B 79(20): 205121.
- Marocico C.A. & Knoester J. (2009), Intermolecular resonance energy transfer in the presence of a dielectric cylinder, Physical Review A 79(5): 053816.
- Jansen T.I.C. & Knoester J. (2009), Waiting time dynamics in two-dimensional infrared spectroscopy, Accounts of Chemical Research 42(9): 1405-1411.
- Vlaming S.M., Augulis R., Stuart M.C.A. & Knoester J. van: Loosdrecht P.H.M. (2009), Exciton spectra and the microscopic structure of self-assembled porphyrin nanotubes, Journal of Physical Chemistry B 113(8): 2273-2283.
- Dijkstra T.E., Hennebicq E., Belljonne D., Gierschner J., Claudio G., Bittner E.R., Knoester J. & Scholes G.D. (2008), Conformational disorder and ultrafast exciton relaxation in PPV-family conjugated polymers, Journal of Physical Chemistry B 113(3): 656-667.
- Barbehenn R.V., Maben R.E. & Knoester J. (2008), Linking phenolic oxidation in the midgut lumen with oxidative stress in the midgut tissues of a tree-feeding caterpillar Malacosoma disstria (Lepidoptera: Lasiocampidae), Environmental Entomology 37(5): 1113-1118.
- Bloem R., Dijkstra A.G., Jansen T.L.C. & Knoester J. (2008), Simulation of vibrational energy transfer in two-dimensional infrared spectroscopy of amide I and amide II modes in solution, The Journal of Chemical Physics 129(5): 055101.
- Malyshev A.V., Malyshev V.A. & Knoester J. (2008), Frequency-controlled localization of optical signals in graded plasmonic chains, Nano Letters 8(8): 2369-2372.
- Klugkist J.A., Malyshev V.A. & Knoester J. (2008), Scaling and universality in the optics of disordered exciton chains, Physical Review Letters 100(21): 216403.
- Klugkist J.A., Malyshev V.A. & Knoester J. (2008), Selection of dominant multi-exciton transitions in disordered linear J-aggregates, Journal of Luminescence 128(5-6): 945-947.
- Vlaming S.M., Malyshev V.A. & Knoester J. (2008), Thermal effects in exciton harvesting in biased one-dimensional systems, Journal of Luminescence 128(5-6): 956-959.
- Dijkstra A.G., Cour Jansen T. la & Knoester J. (2008), Localization and coherent dynamics of excitons in the two-dimensional optical spectrum of molecular J-aggregates, The Journal of Chemical Physics 128(16): 164511.
- La Cour Jansen T. & Knoester J. (2008), Two-dimensional infrared population transfer spectroscopy for enhancing structural markers of proteins, Biophysical Journal 94(5): 1818-1825.
- Klugkist J.A., Malyshev V.A. & Knoester J. (2008), Intrinsic optical bistability of thin films of linear molecular aggregates: the two-exciton approximation, The Journal of Chemical Physics 128(8): 084706.
- La Cour Jansen T. & Knoester J. (2007), Calculation of two-dimensional infrared spectra of ultrafast chemical exchange with numerical Langevin simulations, The Journal of Chemical Physics 127(23): 234502.
- Dijkstra A.G., Jansen T.L.C., Bloem R. & Knoester J. (2007), Vibrational relaxation in simulated two-dimensional infrared spectra of two amide modes in solution, The Journal of Chemical Physics 127(19): 194505.
- Heijs D.J., Dijkstra A.G. & Knoester J. (2007), Ultrafast pump-probe spectroscopy of linear molecular aggregates: effects of exciton coherence and thermal dephasing, Chemical Physics 341(1-3): 230-239.
- Klugkist J.A., Malyshev V.A. & Knoester J. (2007), Intrinsic optical bistability of thin films of linear molecular aggregates: the one-exciton approximation, The Journal of Chemical Physics 127(16): 164705.
- Vlaming S.M., Malyshev V.A. & Knoester J. (2007), Nonmonotonic energy harvesting efficiency in biased exciton chains, The Journal of Chemical Physics 127(15): 154719.
- Malyshev A.V., Malyshev V.A. & Knoester J. (2007), Probing quantum-mechanical level repulsion in disordered systems by means of time-resolved selectively excited resonance fluorescence, Physical Review Letters 98(8): 087401.
- la Cour Jansen T. & Knoester J. (2006), Nonadiabatic effects in the two-dimensional infrared spectra of peptides: application to alanine dipeptide, Journal of Physical Chemistry B 110(45): 22910-22916.
- Pugžlys A., Augulis R., Loosdrecht P.H.M. van, Didraga C., Malyshev V.A. & Knoester J. (2006), Temperature-dependent relaxation of excitons in tubular molecular aggregates: fluorescence decay and stokes shift, Journal of Physical Chemistry B 110(41): 20268-20276.
- Jansen T.L., Dijkstra A.G., Watson T.M., Hirst J.D. & Knoester J. (2006), Modeling the amide I bands of small peptides, The Journal of Chemical Physics 125(4): 044312.
- Heijs D.J., Malyshev V.A. & Knoester J. (2006), Exciton dephasing and thermal line broadening in molecular aggregates, Journal of Luminescence 119-120: 271-276.
- Didraga C., Malyshev V.A. & Knoester J. (2006), Excitation energy transfer between closely spaced multichromophoric systems: effects of band mixing and intraband relaxation, Journal of Physical Chemistry B 110(38): 18818-18827.
- Klugkist J.A., Mostovoy M. & Knoester J. (2006), Mode softening, ferroelectric transition, and tunable photonic band structures in a point-dipole crystal, Physical Review Letters 96(16): 163903.
- Jansen T.L. & Knoester J. (2006), A transferable electrostatic map for solvation effects on amide I vibrations and its application to linear and two-dimensional spectroscopy, The Journal of Chemical Physics 124(4): 044502.
- Knoester & J. (2006), Modeling the optical properties of excitons in linear and tubular J-aggregates, International Journal of Photoenergy 2006(4): 1-10 (061364 ).
- Knoester J. & Daehne S. (2006), Prospects of artificial light harvesting systems: an introduction, International Journal of Photoenergy 2006: 054638.
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