Christiaan Henkel
Lecturer/ Guest
- Name
- Dr. C.V. Henkel
- Telephone
- +31 71 527 2727
- c.v.henkel@liacs.leidenuniv.nl
- ORCID iD
- 0000-0001-9838-8215
Lecturer/ Guest
- Science
- Leiden Inst of Advanced Computer Science
- Jansen H., Dirks R.P., Liem M., Henkel C.V., Heusden G.P.H van, Lemmers R.J.L.F., Omer T., Shai S., Punt P.J. & Spaink H.P. (2018), De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing, F1000Research 6: 618.
- Tol N. van, Rolloos A.M., Pinas J.E., Henkel C.V., Augustijn D., Hooykaas P.J.J. & Zaal E.J. van der (2017), Enhancement of Arabidopsis growth characteristics using genome interrogation with artificial transcription factors, PLOS One 12(3): e0174236.
- Jansen H.J., Liem M., Jong-Raadsen S.A., Dufour S., Weltzien F.A., Swinkels W., Koelewijn A., Palstra A.P., Pelster B., Spaink H.P., Thillart G.E.V.D., Driks R.P. & Henkel C.V. (2017), Rapid de novo assembly of the European eel genome from nanopore sequencing reads, Scientific Reports 7(1): 7213 .
- Kerkkamp H.M.I.J., Manjunatha Kini R., Pospelov A.S., Vonk F.J., Henkel C.V. & Richardson M.K. (2016), Snake Genome Sequencing: Results and Future Prospects, Toxins 8(12): 360.
- Kolder I.C.R.M., Plas S.J. van der, Tan G., Wiegertjes G.F., Forlenza M., Guler A.T., Travin D.Y., Nakao M., Moritomo T., Irnazarow I., Dunnen J.T. den, Anvar S.Y., Jansen H.J., Dirks R.P.H., Palmblad M., Lenhard B., Henkel C.V. & Spaink H.P. (2016), A full-body transcriptome and proteome resource for the European common carp, BMC Genomics 17: 701.
- Burgerhout E., Minegishi Y., Brittijn S.A., Wijze D.L. de, Henkel C.V., Jansen H.J., Spaink H.P., Dirks R.P. & Thillart G.E. van den (2016), Changes in ovarian gene expression profiles and plasma hormone levels in maturing European eel (Anguilla anguilla): biomarkers for broodstock selection, General and Comparative Endocrinology 225: 185-196.
- Niu X., Zhou M., Henkel C.V., Heusden G.P.H. van & Hooykaas P.J.J. (2015), The Agrobacterium tumefaciens virulence protein VirE3 is a transcriptional activator of the F-box gene VBF, The Plant Journal 84(5): 914-24.
- Ager-Wick E., Henkel C.V., Haug T.M. & Weltzien F.A. (2014), Using normalization to resolve RNA-Seq biases caused by amplification from minimal input, Physiological Genomics 46(21): 808-820.
- Henkel C.V., Dulk H. den, Zhang X. & Hooykaas P.J.J. (2014), Genome sequence of the octopine-type Agrobacterium Tumefaciens strain Ach5, Genome Announcements 2(2): e00225-14.
- Ager-Wick E., Dirks R.P., Burgerhout E., Nourizadeh-Lillabadi R., Wijze D.L. de, Spaink H.P. & Thillart G.E. van den (2013), The pituitary gland of the European eel reveals massive expression of genes involved in the melanocortin system, PLoS ONE 8(10): e77396.
- Castoe T.A., Koning A.P.J. de, Hall K.T., Card D.C., Schield D.R., Fujita M.K., Ruggiero R.P., Degner J.F., Daza J.M., Gu W., Reyes-Velasco J., Shaney K.J., Castoe J.M., Fox S.E., Poole A.W., Polanco D., Dobry J., Vandewege M.W., Li Q., Schott R.K., Kapusta A., Minx P., Feschotte C., Uetz P., Ray D.A., Hoffmann F.G., Bogden R., Smith E.N., Chang B.S.W., Vonk F.J., Casewell N.R., Henkel C.V., Richardson M.K., Mackessy S.P., Bronikowsi A.M., Yandell M., Warren W.C., Secor S.M. & Pollock D.D. (2013), The Burmese python genome reveals the molecular basis for extreme adaptation in snakes, Proceedings of the National Academy of Sciences 110(51): 20645-20650.
- Palmblad M., Henkel C.V., Dirks R.P., Meijer A.H., Deelder A.M. & Spaink H.P. (2013), Parallel deep transcriptome and proteome analysis of zebrafish larvae, BMC Research Notes 6: 428.
- Alghisi E., Distel M., Malagola M., Anelli V., Santoriello C., Herwig L., Krudewig A., Henkel C.V., Russo D. & Mione M.C. (2013), Targeting oncogene expression to endothelial cells induces proliferation of the myelo-erythroid lineage by repressing the Notch pathway, Leukemia 27: 2229-2241.
- Vonk F.J., Casewell N.R., Henkel C.V., Heimberg A.M., Jansen H.J., McCleary R.J.R., Kerkkamp H.M.E., Vos R.A., Guerreiro I., Calvete J.J., Wüster W., Woods A.E., Logan J.M., Harrison R.A., Castoe T.A., Koning J.A.P. de, Pollock D.D., Yandell M., Calderon D., Renjifa C., Currier R.B., Salgado D., Pla D., Sanz L., Hyder A.S., Ribeiro J.M.C., Arntzen J.W., Thillart G.E.E.J.M. van den, Boetzer M., Pirovana W., Dirks R.P., Spaink H.P., Duboule D., McGlinn E., Kini R.M. & Richardson M.K. (2014), The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system, Proceedings of the National Academy of Sciences 110(51): 20651-20656.
- Henkel C.V., Burgerhout E., Wijze D.L. de, Dirks R.P.H., Minegishi Y., Jansen H.J., Spaink H.P. & Thillart G.E.E.J.M. van den (2012), Primitive duplicate hox clusters in the European eel's genome, PLoS ONE 7(2): 32231.
- Castoe T.A., Braun E.L., Bronikowski A.M., Cox C.L., Rabosky A.R., Jason de Koning A.P., Dobry J., Fujita M.K., Giorgianni M.W., Hargreaves A., Henkel C.V., Mackessy S.P., O'Meally D., Rokyta D.R., Secor S.M., Streicher J.W., Wray K.P., Yokoyama K.D. & Pollock D.D. (2012), Report from the first snake genomics and integrative biology meeting, Standards in Genomic Sciences 7(1): 150-152.
- Minegishi Y., Henkel C.V., Dirks R.P. & Van den Thillart G.E. (2012), Genomics in eels — towards aquaculture and biology, Marine Biotechnology 14: 583-590.
- Henkel C.V., Dirks R.P., Jansen H.J., Forlenza M., Wiegertjes G.F., Howe K., Thillart G.E.E.J.M. van den & Spaink H.P. (2012), Comparison of the exomes of common carp (Cyprinus carpio) and zebrafish (Danio rerio), Zebrafish 9(2): 59-67.
- Henkel C.V., Dirks R.P.H., Wijze D.L. de, Minegishi Y., Jansen H.J., Dufour S., Tsukamoto K., Spaink H.P. & Thillart G.E.E.J.M. van den (2012), First draft genome sequence of the Japanese eel, Anguilla japonica, Gene 511(2): 195-201.
- Schartl M., Kneitz S., Wilde B., Wagner T., Henkel C.V., Spaink H.P. & Meijerjohann S. (2012), Conserved expression signatures between medaka and human pigment cell tumors, PLoS ONE 7(5): e37880.
- Boetzer M., Henkel C.V., Jansen H.J., Butler D. & Pirovano W. (2011), Scaffolding pre-assembled contigs using SSPACE, Bioinformatics 27(4): 578-579.
- Zhang Y., Stupka E., Henkel C.V., Jansen H.J., Spaink H.P. & Verbeek F.J. (2011), Identification of common carp innate immune genes with whole-genome sequencing and RNA-seq data, Journal of Integrative BioInformatics 8(2): 169.
- Ordas A., Hegedus Z., Henkel C.V., Stockhammer O.W., Butler D., Jansen H.J., Racz P.I., Mink M., Spaink H.P. & Meijer A.H. (2010), Deep sequencing of the innate immune transcriptomic response of zebrafish embryos to Salmonella infection, Fish and Shellfish Immunology 31(5): 716-724.
- Henkel C.V., Bäck T.H.W., Kok J.N., Rozenberg G. & Spaink H.P. (2007), DNA computing of solutions to knapsack problems, Biosystems 88(1-2): 156-162.
- Henkel C.V., Rozenberg G. & Spaink H.P. (2006), Application of mismatch detection methods in DNA computing, Natural computing 5: 151-163.
- Henkel Christiaan (23 February 2005), Experimental DNA computing (Dissertatie, Faculty of Science, Leiden University). Supervisor(s): Spaink H., Rozenberg G. & Bäck T.
- Henkel C.V., Rozenberg G. & Spaink H.P. (2005), Application of mismatch detection methods in DNA computing. Ferretti C., Mauri G. & Zandron C. (Eds.), DNA Computing. DNA 2004. International Conference on DNA Computing and Molecular Programming 7 June 2004 - 10 June 2004. Lecture Notes in Computer Science no. 3384. Berlin, Heidelberg: Springer. 159-168.
- Henkel C.V., Bladergroen R.S., Balog C.I.A., Deelder A.M., Head T., Rozenberg G. & Spaink H.P. (2005), Protein output for DNA computing, Natural computing 4: 1-10.
- Schmidt K.A., Henkel C.V., Rozenberg G. & Spaink H.P. (2004), DNA computing using single-molecule hydridization detection, Nucleic Acids Research 32(17): 4962-4968.
- Schmidt K.A., Henkel C.V., Rozenberg G. & Spaink H.P. (2002), Experimental Aspects of DNA computing by blocking: use of fluoresence techniques for detection. In: Kraayenhof R., Visser A.J.W.G. & Gerritsen H.C. (Eds.), Fluorescnce Spectroscopy, Imaging and Probes. Heidelberg: Springer Verlag. 123-128.