Thomas Beenakker
PhD candidate / guest
- Name
- Dr. T.J.M. Beenakker
- Telephone
- +31 71 527 4410
- t.j.m.beenakker@chem.leidenuniv.nl
- ORCID iD
- 0000-0002-9033-3065
PhD candidate / guest
- Faculty of Science
- Leiden Institute of Chemistry
- LIC/CB/Bio-organic Synthesis
- Kuo C.L., Su Q., Nieuwendijk A.M.C.H. van den, Beenakker T.J.M., Offen W.A., Willems L.I., Boot R.G., Sarris A.J.C., Rosa Alcalde Marques A.R.A., Codée J.D.C., Marel G.A. van der, Florea B.I., Davies G.J., Overkleeft H.S. & Aerts J.M.F.G. (2023), The development of a broad-spectrum retaining β-exo-galactosidase activity-based probe, Organic and Biomolecular Chemistry 21(38): 7813-7820.
- McGregor N.G.S., Boer C. de, Foucart Q.P.O., Beenakker T., Offen W.A.., Codee J.D.C., Willems L.I., Overkleeft H.S. & Davies G.J. (2023), A multiplexing activity-based protein-profiling platform for dissection of a native bacterial xyloglucan-degrading system, ACS Central Science 9(12): 2306-2314.
- McGregor N.G.S., Kuo C.L., Beenakker T.J.M., Wong C.S., Offen W.A., Armstrong Z.W.B., Florea B.I., Codee J.D.C., Overkleeft H.S., Aerts J.M.F.G. & Davies G.J. (2022), Synthesis of broad-specificity activity-based probes for exo-beta-mannosidases, Organic and Biomolecular Chemistry 20(4): 877-886.
- Rowland R.J., Chen Y., Breen I., Wu L., Offen W.A., Beenakker T.J.M., Su Q., Nieuwendijk A.M.C.H. van den, Aerts J.M.F.G., Artola Perez de Azanza M.E., Overkleeft H.S. & Davies G.J. (2021), Design, Synthesis and Structural Analysis of Glucocerebrosidase Imaging Agents, Chemistry: a European Journal 27: 1-13.
- Armstrong Z., Kuo C.L., Lahav D., Liu B., Johnson R., Beenakker T.J.M., Boer C. de, Wong C.S., Rijssel E.R. van, Debets M.F., Florea B.I., Hissink C., Boot R.G., Geurink P.P., Ovaa H., Stelt M. van der, Marel G.A. van der, Codée J.D.C., Aerts J.M.F.G., Wu L., Overkleeft H.S. & Davies G.J. (2020), Manno-epi-cyclophellitols enable activity-based protein profiling of human α-mannosidases and discovery of new golgi mannosidase II inhibitors, Journal of the American Chemical Society 142(30): 13021-13029.
- Schröder S.P., Kallemeijn W.W., Debets M.F., Hansen T., Sobala L.F., Hakki Z., Williams S.J., Beenakker T.J.M., Aerts J.M.F.G., Marel G.A. van der, Codée J.D.C., Davies G.J. & Overkleeft H.S. (2018), Spiro-epoxyglycosides as activity-based probes for glycoside hydrolase family 99 endomannosidase/endomannanase, Chemistry: a European Journal 24(39): 9983-9992.
- Beenakker T.J.M., Wander D.P.A., Codée J.D.C., Aerts J.M.F.G., Marel G.A. van der & Overkleeft H.S. (2018), Synthesis of Carba-Cyclophellitols: a New Class of Carbohydrate Mimetics, European Journal of Organic Chemistry 2018(20-21): 2504-2517.
- Breen I.Z., Artola Perez de Azanza M.E., Wu L., Beenakker T.J.M., Offen W.A., Aerts J.M.F.G., Davies G.J. & Overkleeft H.S. (2018), Competitive and covalent inhibitors of human lysosomal retaining exoglucosidases. In: Maccarrone M. (Ed.), eLS: Wiley Online Library.
- Kytidou K., Beenakker T.J.M., Westerhof L.B., Hokke C.H., Moolenaar G.F., Goosen N., Mirzaian M., Guimaraes da Lomba Ferraz M.J., Geus M.A.R. de, Kallemeijn W.W., Overkleeft H.S., Boot R.G., Schots A., Bosch D. & Aerts J.M.F.G. (2017), Human Alpha Galactosidases Transiently Produced in Nicotiana benthamiana Leaves: New Insights in Substrate Specificities with Relevance for Fabry Disease, Frontiers in Plant Science 8: 1026.
- Beenakker T.J.M., Wander D.P.A., Offen W.A., Artola Perez de Azanza M.E., Raich L., Guimaraes da Lomba Ferraz M.J., Li K.Y., Houben J.H.P.M., Rijssel E.R. van, Hansen T., Marel G.A. van der, Codee J.D.C., Aerts J.M.F.G., Rovira C., Davies G.J. & Overkleeft H.S. (2017), Carba-cyclophellitols Are Neutral Retaining-Glucosidase Inhibitors, Journal of the American Chemical Society 139(19): 6534-6537.
- Schröder S.P., Sande J.W. van de, Kallemeijn W.W., Kuo C.L., Artola Perez de Azanza M.E., Rooden E.J. van, Jiang J., Beenakker T.J.M., Florea B.I., Offen W.A., Davies G.J., Minnaard A.J., Aerts J.M.F.G., Codee J.D.C., Marel G.A. van der & Overkleeft H.S. (2017), Towards broad spectrum activity-based glycosidase probes: synthesis and evaluation of deoxygenated cyclophellitol aziridines, Chemical Communications 53(93): 12528-12531.
- Beenakker T.J.M. (19 October 2017), Design and development of conformational inhibitors and activity-based probes for retaining glycosidases (Dissertatie. Leiden Institute of Chemistry, Science, Leiden University). Supervisor(s) and Co-supervisor(s): Overkleeft H.S. & Marel G.A. van der, Codée J.D.C.
- Jiang J., Artola Perez de Azanza M.E., Beenakker T.J.M., Schröder S.P., Petracca R., Boer C. de, Aerts J.M.F.G., Marel G.A. van der, Codée J.D.C. & Overkleeft H.S. (2016), The synthesis of cyclophellitol-aziridine and its configurational and functional isomers, European Journal of Organic Chemistry 2016(22): 3671-3678.
- Jiang J., Beenakker T.J.M., Kallemeijn W.W., Marel G.A. van der, Elst H. van der, Codee J.D.C., Aerts J.M.F.G. & Overkleeft H.S. (2015), Comparing Cyclophellitol N-Alkyl and N-Acyl Cyclophellitol Aziridines as Activity-Based Glycosidase Probes, Chemistry: a European Journal 21(30): 10861-10869.
- Willems L.I., Beenakker T.J.M., Murray B., Scheij S., Kallemeijn W.W., Boot R.G., Verhoek M., Donker-Koopman W.E., Guimaraes da Lomba Ferraz M.J., Rijssel E.R. van, Florea B.I., Codee J.D.C., Marel G.A. van der, Aerts J.M.F.G. & Overkleeft H.S. (2014), Potent and Selective Activity-Based Probes for GH27 Human Retaining alpha-Galactosidases, Journal of the American Chemical Society 136(33): 11622-11625.
No relevant ancillary activities