3,274 search results for “genome scale metabolic reconstruction” in the Public website
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Biological model representation and analysis
Promotor: Prof.dr. J.N. Kok, Co-promotor: F.J. Verbeek
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The Hittite Inherited Lexicon
This dissertation attempts to describe the linguistic history of Hittite on the basis of a systematic etymological treatment of its entire inherited lexicon, precisely analyzing the phonological and morphological developments.
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A Living Landscape
Bronze Age settlement sites in the Dutch river area (c. 2000-800 BC)
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Causal Discovery from High-Dimensional Data in the Large-Sample Limit
Developing robust algorithms and theory for establishing cause-effect relationships from observational data that scale up to large data sets
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The Netherlands X-omics Initiative
The Netherlands X-omics Initiative is a new facility as part of the National Roadmap for Large-Scale Research Infrastructures. It is partly funded by NWO with a total budget of 40 million euro. The project started on September 2018 and will last for ten years.
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Specificity and side-effects of mutagenesis by CRISPR/Cas9 -induced breaks in plants
Do large deletions represent a risk during CRISP/CAS9-mediated genome editing in plants?
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Shepherding precision gene editing with CRISPR-Cas9 variants and adenoviral vectors
PhD defence
- Laboratory for Ceramics Studies
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Spectroscopy of two-field inflation
This thesis is about cosmological inflation and its relation to observations.
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Projects
Research projects
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Magnetic Resonance Imaging of the Adult Zebrafish
Zebrafish is an excellent model organism for studying various human diseases. Due to opaqueness of the adult phase, in vivo studies are restricted to early embryonic stages. This raises the need for rapid sensitive and non-invasive in vivo imaging methods to follow developmental processes, not only…
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Jie Hu
Science
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Willem Heiser
Faculteit der Sociale Wetenschappen
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Subodh Patil Group - Particle Cosmology
Our research primarily focuses on the early universe and its origins in theories that go beyond the Standard Model of particle physics.
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Pickpocket compounds from Latin to Romance
This thesis discusses the development in Proto–Indo–European, Latin and Romance of a word–formation pattern which the most adequate terminology in use dubs ‘verbal government compounds with a governing first member’; I use the shorthand ‘pickpocket compounds’.
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NVBMB Speaker of the Year 2018: Engineering genomes, karyotypes, and the dark matter of the human genome
Lecture
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Metabolomics Facility Leiden Featured in NWO Large-Scale Scientific Infrastructure website
The metabolomics facility is proud to be featured on the NWO website which reflects the landscape analysis of large-scale research infrastructure in the Netherlands implemented by the Permanent Committee for Large-Scale Scientific Infrastructure.
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Seventeen million for Dutch X-omics Initiative
The Dutch X-omics Initiative has received seventeen million euros from NWO as part of the National Roadmap for Large-Scale Infrastructure. Leiden University’s metabolomics research led by Thomas Hankemeier is one of the participators.
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Genomic glucocorticoid signaling in the hippocampus
PhD defence
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Metabolic regulation of differentiation and maturation
PhD defence
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Multimodality Imaging in Metabolic Heart Disease
PhD defence
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Ischemia/reperfusion injury: a metabolic meltdown
PhD defence
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Computational, biochemical, and NMR-driven structural studies on histone variant H2A.B
Nature uses a special class of histone proteins, histone variants, to modulate the properties of chromatin at defined genomic locations.
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CRISPR Cas-induced targeted mutagenesis with Agrobacterium mediated protein delivery
The RNA guided endonuclease based on the CRISPR/Cas system of Streptococcus pyogenus is a potent new tool for genome engineering in plants.
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Host-Microbe Interactions in Plant Sciences
Plant Sciences' contribution to the Host-Microbe Interactions research theme is to dissect how microorganisms and microbiomes interact with the plant host and the insects on those plants, and how these insights may be harnessed to improve plant growth and health, by steering microbiome composition and…
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Versatile SNP genotyping
The SNP genotyping line offers flexible genotyping for small and large projects at affordable price and high quality. The use as SNPs as molecular markers is very versatile and can be used for a wide variety of scientific questions ranging from paternity analysis, conservatuion genetis towards QTL…
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PUMA (Prospecting the Urban Mines of Amsterdam)
PUMA aims at composing a geological map of the urban mine of Amsterdam for a selection of metals. Where are main deposits of copper, iron and aluminium located, when will they become available for secondary production, in what state and shape are they?
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Key publications
Key publications of the Biomedical Microscale Analytics group.
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joins expert consultation to improve international policies on small-scale fishing
Cultural anthropologist Annet Pauwelussen has been invited by the University of Washington to participate in an expert meeting on 'Global Measures of the Contribution of Small-Scale Fisheries to Sustainable Development'. 29 - 30 May 2018, Seattle.
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Exploring the chemical space of post-translationally modified peptides in Streptomyces with machine learning
The ongoing increase in antimicrobial resistance combined with the low discovery of novel antibiotics is a serious threat to our health care.
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Dynamic biogeography – Hybrid zone movement
Does a moving hybrid zone leave a genomic footprint?
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Genetic and environmental factors determining heterogeneity in preservation stress resistance of Aspergillus niger conidia
Fungal food spoilage often starts with a contamination with spores. Experimental data strongly indicate the existence of subpopulations of spores with different levels of resistance to preservation methods.
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Visualizing cityscapes of Classical antiquity
This study aims to make a practical contribution to a new understanding and use of 3D reconstructions, namely as ‘laboratories’ to test hypotheses and visualize, evaluate and discuss alternative interpretations.
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Cholesterol metabolism and hematopoiesis interaction in atherothrombosis
PhD defence
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Irene Groot receives Vidi grant: looking at catalysts at atomic scale
Catalysts are indispensable in everyday life. We know what they do and more or less how they do it, but we still lack a fundamental understanding about their functioning at an atomic scale. Therefore, Irene Groot from the Leiden Institute of Chemistry develops new measuring techniques to unravel the…
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Biotransformation of plant metabolites in microorganisms
- How to deconvolute metabolic mixture of precursors and products by biontransformation? - How to optimize the reaction conditions to produce bioactive compounds in biotransformation? - What is the effect of co-treating fungi or bacteria for biotransformations?
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Unlocking Nature’s Pharmacy from Bogland Species
Development of Natural Resource for New Medicines
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BioTherapeutics (MSc)
The master’s specialisation BioTherapeutics at Leiden University is a two-year programme which trains students in research in specific drug delivery techniques. The programme also examines the development of new therapeutic approaches to treat immune-based disorders, such as atherosclerosis, metabolic…
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Bernd Schneider
Dr. at Max Planck Institute for chemical Ecology, Jena - Germany
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Bayesian Inference for Gaussian Models
This dissertation studies the Asymptotics of Bayesian nonparametric inference for Gaussian linear models.
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Research
Research lines within the Pharmacy group:
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Joost Visser appointed as professor of Large Scale Software and Data Science
On 15 November Joost Visser started as Professor of Large Scale Software and Data Science at the Leiden Institute of Advanced Computer Science (LIACS). He will head the software engineering research at LIACS and becomes head of the ICT in Business and the Public Sector master's program.
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EMBO Workshop - Plant Genome Stability and Change 2020
Conference
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The development of the Proto-Indo-European syllabic liquids in Greek
Ancient Greek was spoken in a large number of different dialects. Although we do not find direct evidence for syllabic liquids in any of our sources, comparative evidence shows that these sounds must have been present in Proto-Greek, and that they were retained until comparatively recently in the prehistory…
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A Deep History of Human Landscape Manipulation
This study aims to provide a long time perspective of human landscape manipulation. Studying the roles of prehistoric foragers in past ecosystems is of great importance to establish the character of past 'natural' landscapes and to enhance the management of current ones.
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Visualizing cityscapes of Classical antiquity: From early modern reconstruction drawings to digital 3D models
PhD defence
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Economies of Destruction
The emergence of metalwork deposition during the Bronze Age in Northwest Europe, c. 2300-1500 BC
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Galaxy formation and the structure of the Universe
Promotores: Prof.dr. J. Schaye, Prof.dr. S.D.M. White (MPA Garching)
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The plentiful river
Ichthyoarchaeological and biomolecular research to assess the trophic ecology of the Rhine-Meuse delta in the Holocene